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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas sp. RS175
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500 nt
PFR28_04702 and PFR28_04703 are separated by 133 nucleotides
PFR28_04703 and PFR28_04704 are separated by 237 nucleotides
PFR28_04704 and PFR28_04705 are separated by 116 nucleotides
PFR28_04705 and PFR28_04706 are separated by 133 nucleotides
PFR28_04702: PFR28_04702 - hypothetical protein, at 5,362,093 to 5,362,704
_04702
PFR28_04703: PFR28_04703 - hypothetical protein, at 5,362,838 to 5,363,278
_04703
PFR28_04704: PFR28_04704 - hypothetical protein, at 5,363,516 to 5,363,881
_04704
PFR28_04705: PFR28_04705 - hypothetical protein, at 5,363,998 to 5,365,020
_04705
PFR28_04706: PFR28_04706 - hypothetical protein, at 5,365,154 to 5,365,567
_04706
Group
Condition
PFR28
_04702
PFR28
_04703
PFR28
_04704
PFR28
_04705
PFR28
_04706
carbon source
L-Phenylalanine carbon 5 mM
-0.1
-0.4
+0.2
-0.1
-1.1
carbon source
L-tyrosine (C) 10 mM
+0.0
+0.1
-0.1
-0.2
-1.2
carbon source
Azelaic carbon 10 mM
-0.1
-0.3
+0.1
+0.1
-1.2
carbon source
Choline chloride (C)
-0.3
-0.3
+0.1
+0.1
-0.9
carbon source
Betaine (C) 2.5 mM
+0.0
-1.1
+0.1
-0.1
-0.1
carbon source
4-Guanidinobutyric (C) 10 mM
-0.1
-0.2
-0.1
-0.1
-0.5
carbon source
L-Arginine (C) 10 mM
-0.3
-0.3
-0.1
-0.0
-0.3
carbon source
L-Lysine (C) 10 mM
-0.2
-0.7
+0.0
+0.1
-0.2
carbon source
D-(+)-Galactosamine (C) 10 mM
-0.2
-0.2
+0.1
-0.0
-0.7
carbon source
Fumarate (C) 20 mM
-0.1
-0.0
-0.1
+0.1
-0.8
carbon source
Betaine (C)
-0.2
-0.2
+0.1
-0.0
-0.6
carbon source
Cytidine carbon 10 mM
-0.3
+0.2
+0.1
-0.0
-0.6
carbon source
L-Lactate (C) 10 mM
-0.2
-0.3
-0.2
-0.2
+0.6
carbon source
L-Malic (C) 10 mM
-0.2
+0.2
+0.3
-0.1
-0.3
carbon source
Cytidine (C)
+0.1
+0.4
+0.0
-0.0
-0.7
carbon source
4-Acetoxy-3-methoxycinnamic (C)
-0.2
+0.3
+0.2
-0.2
-0.3
carbon source
butyrate (C) 10 mM
-0.1
+0.4
-0.2
+0.3
-0.5
carbon source
octanoate (C)
+0.0
+0.7
-0.0
-0.1
-0.5
stress
D-Glucose (C); with Chloride 400 mM
+0.4
+0.1
+0.1
+0.2
-0.4
carbon source
D-Trehalose (C) 5 mM
-0.0
-0.4
+0.1
+0.0
+0.8
carbon source
4-Hydroxybenzoic Acid (C) 2.5 mM
-0.4
+0.1
+0.1
+0.1
+0.6
carbon source
propionate carbon 20 mM
-0.3
+0.2
+0.0
+0.1
+0.5
carbon source
Ferulic Acid (C) 2.5 mM
-0.2
+0.2
+0.0
+0.0
+0.6
carbon source
Vanillic Acid (C) 2.5 mM
+0.1
+0.2
-0.2
+0.0
+0.6
carbon source
Ferulic Acid (C) 2.5 mM
-0.1
+0.3
-0.1
+0.1
+0.5
carbon source
4-Hydroxybenzoic Acid (C) 2.5 mM
-0.2
+0.3
+0.0
+0.1
+0.5
carbon source
Guanosine (C)
+0.2
+0.4
+0.2
-0.2
+0.3
carbon source
4-Hydroxyphenylpropionic (C) 2.5 mM
-0.1
+0.1
+0.2
+0.1
+0.7
carbon source
Guanosine (C)
+0.3
-0.3
+0.5
+0.1
+0.5
carbon source
4-Hydroxyphenylpropionic (C) 2.5 mM
+0.0
+0.1
+0.2
-0.0
+0.8
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PFR28_04704
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PFR28_04706
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