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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas sp. RS175
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500 nt
PFR28_04695 and PFR28_04696 are separated by 194 nucleotides
PFR28_04696 and PFR28_04697 overlap by 20 nucleotides
PFR28_04697 and PFR28_04698 are separated by 112 nucleotides
PFR28_04698 and PFR28_04699 overlap by 4 nucleotides
PFR28_04695: PFR28_04695 - hypothetical protein, at 5,354,267 to 5,355,325
_04695
PFR28_04696: PFR28_04696 - hypothetical protein, at 5,355,520 to 5,356,194
_04696
PFR28_04697: PFR28_04697 - Oligopeptidase A, at 5,356,175 to 5,358,196
_04697
PFR28_04698: PFR28_04698 - hypothetical protein, at 5,358,309 to 5,358,587
_04698
PFR28_04699: PFR28_04699 - Oligopeptidase A, at 5,358,584 to 5,360,662
_04699
Group
Condition
PFR28
_04695
PFR28
_04696
PFR28
_04697
PFR28
_04698
PFR28
_04699
carbon source
propionate carbon 20 mM
+0.0
-0.0
-0.1
-2.5
-0.8
carbon source
succinate (C)
-0.2
+0.2
-0.1
-2.0
-0.8
carbon source
acetate carbon 10 mM
-0.1
+0.0
-0.0
-2.1
-0.6
carbon source
propionate carbon 20 mM
-0.1
-0.0
+0.0
-1.8
-1.0
carbon source
acetate carbon 10 mM
-0.0
-0.1
-0.0
-1.9
-0.7
carbon source
propionate carbon 20 mM
-0.1
-0.1
-0.1
-1.7
-0.7
carbon source
succinate (C)
-0.2
-0.1
+0.1
-1.5
-0.9
carbon source
acetate carbon 10 mM
-0.1
-0.1
+0.0
-1.5
-0.7
carbon source
Fumarate (C) 20 mM
-0.0
+0.0
+0.0
-1.3
-1.0
carbon source
Shikimic Acid carbon 10 mM
+0.0
-0.3
-0.1
-1.4
-0.6
carbon source
Fumarate (C) 20 mM
-0.0
-0.1
+0.1
-1.4
-0.8
carbon source
Fumarate (C) 20 mM
+0.1
-0.0
-0.0
-1.5
-0.8
carbon source
succinate (C)
-0.1
-0.0
-0.1
-1.4
-0.4
carbon source
Shikimic Acid carbon 10 mM
+0.0
-0.1
-0.1
-1.2
-0.6
carbon source
butyrate (C) 10 mM
-0.2
-0.1
+0.2
-1.1
-0.6
carbon source
Shikimic Acid (C) 10 mM
+0.0
-0.2
+0.0
-1.0
-0.6
carbon source
4-Aminobutyric carbon 10 mM
-0.0
-0.3
-0.1
-0.8
-0.4
carbon source
Shikimic Acid (C) 10 mM
-0.0
+0.1
-0.1
-0.8
-0.7
carbon source
4-Hydroxybenzoic Acid (C) 2.5 mM
+0.0
+0.0
+0.0
-1.3
-0.2
carbon source
Shikimic Acid carbon 10 mM
+0.1
+0.0
+0.0
-1.0
-0.5
carbon source
Quinic Acid (C) 10 mM
-0.2
-0.1
+0.1
-0.6
-0.6
carbon source
4-Aminobutyric carbon 10 mM
-0.1
-0.1
-0.1
-0.8
-0.3
carbon source
4-Guanidinobutyric (C) 10 mM
+0.1
-0.3
+0.1
-0.6
-0.5
carbon source
4-Hydroxybenzoic Acid (C) 2.5 mM
+0.1
+0.1
+0.1
-1.2
-0.3
carbon source
acetate (C) 30 mM
-0.0
+0.1
+0.1
-0.8
-0.5
carbon source
Ferulic Acid (C) 2.5 mM
+0.1
-0.0
-0.0
-1.1
-0.2
carbon source
methyl ferulate (C)
+0.2
+0.0
+0.1
-1.0
-0.5
carbon source
Fumarate (C) 20 mM
-0.1
+0.2
-0.0
-0.7
-0.4
carbon source
Ferulic Acid (C) 2.5 mM
-0.0
+0.1
+0.2
-1.0
-0.1
carbon source
methyl-trans-p-coumarate (C)
+0.2
+0.5
-0.0
-0.4
-0.6
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PFR28_04696
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PFR28_04697
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