Fitness for 5 genes in Pseudomonas sp. RS175

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500 ntPFR28_04651 and PFR28_04652 are separated by 96 nucleotidesPFR28_04652 and PFR28_04653 are separated by 15 nucleotidesPFR28_04653 and PFR28_04654 are separated by 200 nucleotidesPFR28_04654 and PFR28_04655 are separated by 130 nucleotides PFR28_04651: PFR28_04651 - Glycine cleavage system transcriptional activator, at 5,310,025 to 5,310,975 _04651 PFR28_04652: PFR28_04652 - Choline-sulfatase, at 5,311,072 to 5,312,604 _04652 PFR28_04653: PFR28_04653 - hypothetical protein, at 5,312,620 to 5,313,540 _04653 PFR28_04654: PFR28_04654 - C4-dicarboxylic acid transporter DauA, at 5,313,741 to 5,315,309 _04654 PFR28_04655: PFR28_04655 - Shikimate dehydrogenase (NADP(+)), at 5,315,440 to 5,316,261 _04655
Group Condition PFR28_04651 PFR28_04652 PFR28_04653 PFR28_04654 PFR28_04655
carbon source Guanosine (C) -0.1 -0.2 -0.4 -0.1 N.D.
carbon source Azelaic carbon 10 mM -0.0 -0.2 -0.4 -0.0 N.D.
carbon source Cytidine (C) -0.1 -0.0 -0.4 +0.1 N.D.
carbon source D-(+)-Galactosamine (C) 10 mM -0.1 +0.2 -0.3 -0.1 N.D.
carbon source L-Phenylalanine carbon 5 mM -0.1 -0.2 +0.2 -0.1 N.D.
carbon source D,L-Malic Acid (C) +0.1 +0.1 -0.4 +0.0 N.D.
carbon source L-Malic (C) -0.2 +0.1 +0.1 -0.2 N.D.
carbon source L-Lysine (C) 10 mM +0.2 +0.1 -0.2 -0.2 N.D.
carbon source Cytidine (C) -0.1 +0.3 -0.2 +0.0 N.D.
carbon source L-Lactate (C) 10 mM +0.4 -0.0 -0.2 -0.1 N.D.
carbon source Guanosine (C) -0.1 +0.3 +0.1 -0.3 N.D.
carbon source D-Mannose carbon 10 mM +0.0 +0.2 -0.3 +0.1 N.D.
carbon source butyrate (C) 10 mM +0.1 -0.2 +0.4 -0.1 N.D.
carbon source Xanthosine (C) +0.1 +0.2 +0.1 -0.2 N.D.
carbon source L-Phenylalanine 5 mM (C) +0.1 -0.2 +0.2 +0.2 N.D.
carbon source Xanthosine (C) -0.2 +0.3 +0.0 +0.1 N.D.
carbon source p-Coumaric (C) +0.2 +0.1 +0.2 -0.1 N.D.
carbon source Choline chloride (C) +0.1 +0.4 +0.1 -0.0 N.D.
carbon source 4-Hydroxyphenylpropionic (C) 2.5 mM -0.2 +0.4 -0.1 +0.5 N.D.
carbon source methyl ferulate (C) +0.1 +0.3 +0.2 +0.1 N.D.
carbon source methyl ferulate (C) +0.1 +0.4 -0.1 +0.2 N.D.
in planta Plant=Sorghum; PlantTreatment=None; Sample=root_top; GrowthSubstrate=calcine_clay; Collection=Direct +0.3 +0.3 +0.0 -0.0 N.D.
carbon source octanoate (C) +0.2 +0.3 +0.1 +0.0 N.D.
carbon source methyl-trans-p-coumarate (C) +0.2 +0.7 -0.1 -0.0 N.D.
carbon source methyl ferulate (C) +0.1 +0.5 +0.2 -0.0 N.D.
carbon source 4-Hydroxybenzoic Acid (C) 2.5 mM +0.2 +0.3 +0.0 +0.3 N.D.
carbon source 4-Guanidinobutyric (C) +0.3 +0.2 +0.3 -0.0 N.D.
carbon source methyl-trans-p-coumarate (C) +0.2 +0.5 +0.0 +0.1 N.D.
carbon source methyl-trans-p-coumarate (C) +0.2 +0.5 +0.2 +0.1 N.D.
carbon source 4-Hydroxyphenylpropionic (C) 2.5 mM +0.2 +0.1 +0.4 +0.1 N.D.
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