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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas sp. RS175
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500 nt
PFR28_04466 and PFR28_04467 are separated by 12 nucleotides
PFR28_04467 and PFR28_04468 are separated by 2 nucleotides
PFR28_04468 and PFR28_04469 are separated by 85 nucleotides
PFR28_04469 and PFR28_04470 overlap by 1 nucleotides
PFR28_04466: PFR28_04466 - hypothetical protein, at 5,087,056 to 5,087,490
_04466
PFR28_04467: PFR28_04467 - hypothetical protein, at 5,087,503 to 5,091,945
_04467
PFR28_04468: PFR28_04468 - hypothetical protein, at 5,091,948 to 5,092,226
_04468
PFR28_04469: PFR28_04469 - putative deoxyribonuclease RhsA, at 5,092,312 to 5,096,676
_04469
PFR28_04470: PFR28_04470 - hypothetical protein, at 5,096,676 to 5,097,155
_04470
Group
Condition
PFR28
_04466
PFR28
_04467
PFR28
_04468
PFR28
_04469
PFR28
_04470
carbon source
Vanillic Acid (C) 2.5 mM
-1.0
-0.1
N.D.
-0.0
N.D.
carbon source
Inosine (C)
-0.8
-0.1
N.D.
-0.1
N.D.
carbon source
4-Hydroxyphenylpropionic (C) 2.5 mM
-0.9
-0.1
N.D.
+0.2
N.D.
carbon source
sn-glycero-3-phosphocholine (C)
-0.5
-0.2
N.D.
-0.2
N.D.
carbon source
p-Coumaric (C)
-0.8
-0.1
N.D.
+0.0
N.D.
carbon source
Cytidine (C)
-0.6
-0.1
N.D.
-0.1
N.D.
carbon source
Vanillic Acid (C) 2.5 mM
-0.5
-0.1
N.D.
-0.1
N.D.
carbon source
Quinic Acid (C)
-0.5
-0.0
N.D.
-0.2
N.D.
carbon source
butyrate (C) 10 mM
-0.4
-0.2
N.D.
-0.1
N.D.
carbon source
p-Coumaric (C)
-0.4
-0.2
N.D.
-0.1
N.D.
carbon source
Guanosine (C)
-0.6
-0.0
N.D.
-0.0
N.D.
carbon source
Cytidine (C)
-0.4
-0.1
N.D.
-0.2
N.D.
carbon source
trans-aconitic (C) 5 mM
-0.5
+0.0
N.D.
-0.1
N.D.
carbon source
L-Valine (C) 10 mM
-0.6
-0.0
N.D.
+0.0
N.D.
carbon source
Inosine (C)
-0.4
-0.1
N.D.
-0.1
N.D.
carbon source
Glycocyamine 20 mM (C)
-0.3
-0.1
N.D.
-0.1
N.D.
stress
D-Glucose (C); with Chloride 200 mM
-0.3
-0.2
N.D.
-0.1
N.D.
carbon source
D-(+)-Galactosamine (C) 10 mM
-0.4
-0.1
N.D.
-0.1
N.D.
carbon source
L-Valine (C) 10 mM
-0.6
+0.1
N.D.
-0.0
N.D.
carbon source
4-Hydroxybenzoic Acid (C) 2.5 mM
-0.5
-0.1
N.D.
+0.1
N.D.
carbon source
acetate (C) 30 mM
-0.6
+0.1
N.D.
-0.1
N.D.
carbon source
4-Guanidinobutyric (C)
-0.4
+0.0
N.D.
-0.2
N.D.
carbon source
L-tyrosine (C) 10 mM
-0.6
+0.0
N.D.
+0.1
N.D.
carbon source
Guanosine (C)
-0.4
+0.1
N.D.
-0.1
N.D.
carbon source
Xanthosine (C)
-0.5
+0.0
N.D.
+0.1
N.D.
carbon source
L-Lysine (C) 10 mM
+0.4
-0.1
N.D.
+0.1
N.D.
carbon source
L-Lactate (C) 10 mM
+0.6
-0.1
N.D.
-0.0
N.D.
carbon source
methyl-trans-p-coumarate (C)
+0.5
+0.2
N.D.
-0.1
N.D.
carbon source
methyl-trans-p-coumarate (C)
+0.6
+0.1
N.D.
-0.0
N.D.
carbon source
Inosine carbon 10 mM
+0.7
-0.1
N.D.
+0.1
N.D.
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