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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas sp. RS175
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFR28_04454 and PFR28_04455 are separated by 430 nucleotides
PFR28_04455 and PFR28_04456 are separated by 81 nucleotides
PFR28_04456 and PFR28_04457 are separated by 2 nucleotides
PFR28_04457 and PFR28_04458 are separated by 166 nucleotides
PFR28_04454: PFR28_04454 - hypothetical protein, at 5,072,229 to 5,073,692
_04454
PFR28_04455: PFR28_04455 - hypothetical protein, at 5,074,123 to 5,075,160
_04455
PFR28_04456: PFR28_04456 - hypothetical protein, at 5,075,242 to 5,075,748
_04456
PFR28_04457: PFR28_04457 - hypothetical protein, at 5,075,751 to 5,077,247
_04457
PFR28_04458: PFR28_04458 - Protein hcp1, at 5,077,414 to 5,077,902
_04458
Group
Condition
PFR28
_04454
PFR28
_04455
PFR28
_04456
PFR28
_04457
PFR28
_04458
carbon source
Cytidine (C)
-1.0
+0.0
-0.4
-0.1
-0.3
carbon source
p-Coumaric (C)
-0.8
+0.3
+0.2
-0.1
+0.3
carbon source
4-Hydroxyphenylpropionic (C) 2.5 mM
+0.4
+0.3
-0.9
+0.2
+0.2
carbon source
4-Hydroxyphenylpropionic (C) 2.5 mM
+0.4
+0.3
-0.6
+0.3
+0.1
carbon source
D-(+)-Galactosamine (C) 10 mM
-0.2
+0.4
+0.3
+0.5
-0.1
carbon source
butyrate (C) 10 mM
-0.1
+0.5
-0.3
+0.3
+0.5
carbon source
L-Malic (C) 10 mM
-0.2
+0.3
+0.6
+0.4
+0.1
carbon source
trans-aconitic (C) 5 mM
-0.2
+0.2
+0.2
+0.4
+0.6
carbon source
L-Lysine (C) 10 mM
-0.2
+0.2
+0.5
+0.5
+0.4
carbon source
4-Guanidinobutyric (C) 10 mM
-0.1
+0.3
+0.2
+0.4
+0.5
carbon source
L-Valine (C) 10 mM
-0.2
+0.2
+0.5
+0.5
+0.4
carbon source
L-Lactate (C) 10 mM
-0.1
+0.3
+0.4
+0.4
+0.4
carbon source
Adenosine (C) 10 mM
-0.2
+0.1
+0.6
+0.5
+0.5
carbon source
NAG carbon 10 mM
-0.1
+0.1
+0.4
+0.4
+0.6
carbon source
Betaine (C) 2.5 mM
-0.0
+0.3
+0.2
+0.5
+0.6
carbon source
Xanthosine (C) 10 mM
-0.1
+0.4
+0.3
+0.3
+0.6
carbon source
D-Galacturonic Acid (C) 10 mM
-0.1
+0.3
+0.4
+0.4
+0.5
carbon source
D-(+)-Galactosamine (C) 10 mM
-0.2
+0.3
+0.4
+0.5
+0.5
carbon source
methyl-trans-p-coumarate (C)
-0.2
+0.4
+0.6
+0.4
+0.4
carbon source
Betaine (C) 2.5 mM
+0.2
+0.3
+0.2
+0.5
+0.4
carbon source
Uridine (C) 10 mM
-0.2
+0.4
+0.6
+0.4
+0.4
carbon source
sn-glycero-3-phosphocholine (C) 10 mM
+0.2
+0.3
+0.4
+0.2
+0.6
carbon source
L-Carnitine (C) 10 mM
-0.0
+0.3
+0.6
+0.5
+0.3
carbon source
methyl-trans-p-coumarate (C)
-0.2
+0.6
+0.3
+0.4
+0.6
carbon source
Betaine (C) 2.5 mM
+0.0
+0.3
+0.4
+0.5
+0.5
carbon source
Fumarate (C) 20 mM
-0.0
+0.3
+0.4
+0.6
+0.4
carbon source
trans-aconitic (C) 5 mM
+0.0
+0.1
+0.7
+0.4
+0.5
carbon source
Choline (C) 10 mM
+0.0
+0.4
+0.6
+0.4
+0.3
carbon source
Adenosine (C) 10 mM
-0.1
+0.5
+0.4
+0.6
+0.4
carbon source
Inosine carbon 10 mM
+0.3
+0.3
+0.6
+0.2
+0.4
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PFR28_04455
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PFR28_04456
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PFR28_04458
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