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Fitness for 5 genes in
Pseudomonas sp. RS175
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFR28_04266 and PFR28_04267 are separated by 26 nucleotides
PFR28_04267 and PFR28_04268 are separated by 66 nucleotides
PFR28_04268 and PFR28_04269 are separated by 115 nucleotides
PFR28_04269 and PFR28_04270 are separated by 144 nucleotides
PFR28_04266: PFR28_04266 - Coniferyl aldehyde dehydrogenase, at 4,868,377 to 4,869,807
_04266
PFR28_04267: PFR28_04267 - hypothetical protein, at 4,869,834 to 4,870,367
_04267
PFR28_04268: PFR28_04268 - putative GMC-type oxidoreductase, at 4,870,434 to 4,872,029
_04268
PFR28_04269: PFR28_04269 - Phosphopantetheine adenylyltransferase, at 4,872,145 to 4,872,624
_04269
PFR28_04270: PFR28_04270 - Ferredoxin, at 4,872,769 to 4,873,020
_04270
Group
Condition
PFR28
_04266
PFR28
_04267
PFR28
_04268
PFR28
_04269
PFR28
_04270
carbon source
4-Hydroxyphenylpropionic (C) 2.5 mM
+0.0
-2.1
+0.2
N.D.
N.D.
carbon source
L-Lactate (C) 10 mM
+0.1
-1.5
-0.2
N.D.
N.D.
carbon source
Inosine carbon 10 mM
+0.1
-1.2
-0.1
N.D.
N.D.
carbon source
Malonic (C) 10 mM
+0.1
-0.7
-0.4
N.D.
N.D.
carbon source
Azelaic carbon 10 mM
+0.1
-0.9
-0.2
N.D.
N.D.
carbon source
Glycocyamine 10 mM (C)
-0.1
-0.9
+0.1
N.D.
N.D.
carbon source
Quinic Acid (C)
+0.0
-1.0
+0.1
N.D.
N.D.
carbon source
D-(+)-Galactosamine (C) 10 mM
-0.0
-0.9
+0.1
N.D.
N.D.
carbon source
sn-glycero-3-phosphocholine (C)
+0.1
-1.0
+0.1
N.D.
N.D.
carbon source
Shikimic Acid (C) 10 mM
+0.0
-0.9
+0.1
N.D.
N.D.
carbon source
D-Ribose (C) 10 mM
+0.0
-0.9
+0.1
N.D.
N.D.
carbon source
Guanosine (C)
+0.3
+0.4
-0.4
N.D.
N.D.
carbon source
Cytidine (C)
-0.3
+0.8
+0.0
N.D.
N.D.
carbon source
trans-aconitic (C)
-0.1
+0.8
+0.0
N.D.
N.D.
carbon source
Choline (C) 10 mM
+0.1
+0.8
-0.1
N.D.
N.D.
carbon source
D,L-Malic Acid (C)
-0.1
+0.9
+0.1
N.D.
N.D.
stress
D-Glucose (C); with Chloride 200 mM
-0.0
+0.9
+0.1
N.D.
N.D.
carbon source
Inosine (C)
-0.0
+1.0
+0.0
N.D.
N.D.
carbon source
L-Lysine (C) 10 mM
+0.3
+0.6
+0.0
N.D.
N.D.
carbon source
L-Lysine (C) 10 mM
+0.1
+1.0
-0.1
N.D.
N.D.
carbon source
L-Leucine (C) 10 mM
+0.2
+0.7
+0.1
N.D.
N.D.
carbon source
methyl-trans-p-coumarate (C)
+0.0
+0.8
+0.1
N.D.
N.D.
carbon source
D-Glucuronic (C) 10 mM
-0.1
+0.9
+0.2
N.D.
N.D.
carbon source
octanoate (C)
+0.1
+1.0
+0.1
N.D.
N.D.
carbon source
Xanthosine (C)
+0.2
+0.7
+0.3
N.D.
N.D.
carbon source
Guanosine (C)
+0.1
+1.3
-0.1
N.D.
N.D.
carbon source
octanoate (C)
+0.0
+1.1
+0.2
N.D.
N.D.
carbon source
Betaine (C)
+0.2
+0.9
+0.3
N.D.
N.D.
carbon source
Guanosine (C)
+0.4
+1.2
-0.2
N.D.
N.D.
carbon source
methyl-trans-p-coumarate (C)
+0.1
+1.2
+0.1
N.D.
N.D.
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