Fitness for 5 genes in Pseudomonas sp. RS175

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500 ntPFR28_04189 and PFR28_04190 are separated by 19 nucleotidesPFR28_04190 and PFR28_04191 are separated by 128 nucleotidesPFR28_04191 and PFR28_04192 are separated by 189 nucleotidesPFR28_04192 and PFR28_04193 are separated by 103 nucleotides PFR28_04189: PFR28_04189 - Ubiquinone biosynthesis O-methyltransferase, mitochondrial, at 4,790,937 to 4,791,932 _04189 PFR28_04190: PFR28_04190 - S-adenosylmethionine synthase, at 4,791,952 to 4,793,142 _04190 PFR28_04191: PFR28_04191 - Homoserine/homoserine lactone efflux protein, at 4,793,271 to 4,793,891 _04191 PFR28_04192: PFR28_04192 - DNA ligase B, at 4,794,081 to 4,795,754 _04192 PFR28_04193: PFR28_04193 - Protein YqjC, at 4,795,858 to 4,796,250 _04193
Group Condition PFR28_04189 PFR28_04190 PFR28_04191 PFR28_04192 PFR28_04193
carbon source propionate carbon 20 mM -0.3 N.D. -0.3 -0.3 N.D.
in planta Plant=Sorghum; PlantTreatment=None; Sample=root_top; GrowthSubstrate=calcine_clay; Collection=Direct -0.6 N.D. -0.0 -0.3 N.D.
carbon source Inosine carbon 10 mM -0.4 N.D. -0.2 -0.3 N.D.
carbon source Quinic Acid (C) -0.2 N.D. -0.2 -0.2 N.D.
carbon source sn-glycero-3-phosphocholine (C) -0.5 N.D. +0.0 -0.2 N.D.
carbon source 5-Aminovaleric carbon 10 mM -0.5 N.D. +0.0 -0.1 N.D.
carbon source D-Xylose carbon 10 mM -0.6 N.D. +0.1 -0.1 N.D.
carbon source L-Carnitine 10 mM (C) -0.5 N.D. +0.1 -0.1 N.D.
carbon source 5-Aminovaleric carbon 10 mM -0.4 N.D. -0.1 +0.1 N.D.
carbon source Betaine (C) -0.2 N.D. +0.2 -0.3 N.D.
carbon source L-tyrosine (C) 10 mM +0.1 N.D. +0.1 -0.5 N.D.
carbon source Guanosine (C) -0.2 N.D. -0.2 +0.3 N.D.
carbon source butyrate (C) +0.3 N.D. +0.1 -0.4 N.D.
carbon source pyruvate (C) +0.3 N.D. -0.0 -0.3 N.D.
carbon source L-Phenylalanine carbon 5 mM +0.4 N.D. -0.3 +0.0 N.D.
carbon source Xanthosine (C) +0.1 N.D. +0.3 -0.3 N.D.
stress D-Glucose (C); with Chloride 200 mM +0.6 N.D. -0.2 -0.2 N.D.
carbon source L-Leucine (C) 10 mM +0.5 N.D. -0.0 -0.3 N.D.
carbon source butyrate (C) 10 mM +0.4 N.D. -0.1 -0.1 N.D.
stress D-Glucose (C); with Chloride 200 mM +0.6 N.D. -0.3 +0.0 N.D.
carbon source 4-Hydroxyphenylpropionic (C) 2.5 mM +0.4 N.D. -0.2 +0.2 N.D.
stress D-Glucose (C); with Chloride 400 mM +0.6 N.D. +0.0 -0.2 N.D.
carbon source 4-Hydroxyphenylpropionic (C) 2.5 mM -0.1 N.D. +0.1 +0.6 N.D.
carbon source Fumarate (C) 20 mM +0.3 N.D. +0.3 -0.0 N.D.
carbon source L-Leucine (C) 10 mM +0.6 N.D. +0.1 -0.0 N.D.
stress D-Glucose (C); with Chloride 200 mM +0.7 N.D. -0.0 -0.0 N.D.
carbon source L-Leucine (C) 10 mM +0.8 N.D. -0.1 -0.0 N.D.
stress D-Glucose (C); with Chloride 400 mM +0.7 N.D. +0.1 -0.0 N.D.
stress D-Glucose (C); with Chloride 400 mM +0.7 N.D. +0.1 -0.0 N.D.
carbon source 4-Hydroxyphenylpropionic (C) 2.5 mM +0.7 N.D. +0.1 +0.0 N.D.
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PFR28_04189
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PFR28_04193
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