Fitness for 5 genes in Pseudomonas sp. RS175

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500 ntPFR28_04113 and PFR28_04114 are separated by 147 nucleotidesPFR28_04114 and PFR28_04115 overlap by 4 nucleotidesPFR28_04115 and PFR28_04116 are separated by 255 nucleotidesPFR28_04116 and PFR28_04117 are separated by 93 nucleotides PFR28_04113: PFR28_04113 - DNA polymerase III PolC-type, at 4,702,024 to 4,702,731 _04113 PFR28_04114: PFR28_04114 - putative RNA polymerase sigma factor FecI, at 4,702,879 to 4,703,397 _04114 PFR28_04115: PFR28_04115 - Protein FecR, at 4,703,394 to 4,704,374 _04115 PFR28_04116: PFR28_04116 - Ferrichrome outer membrane transporter/phage receptor, at 4,704,630 to 4,707,068 _04116 PFR28_04117: PFR28_04117 - hypothetical protein, at 4,707,162 to 4,708,292 _04117
Group Condition PFR28_04113 PFR28_04114 PFR28_04115 PFR28_04116 PFR28_04117
carbon source butyrate (C) 10 mM -0.6 -0.2 -0.5 -0.0 -0.5
carbon source D,L-Malic Acid (C) 10 mM -0.5 -0.2 -1.0 -0.0 -0.1
carbon source L-Lactate (C) 10 mM -0.8 -0.1 -0.9 +0.0 +0.1
carbon source Guanosine (C) -1.4 +0.3 +0.2 +0.0 -0.8
carbon source Methyl 3-(4-hydroxyphenyl)propionate (C) 2.5 mM -2.2 -0.0 +0.3 -0.1 +0.3
carbon source 4-Hydroxybenzoic Acid (C) 2.5 mM -2.2 +0.0 +0.4 +0.0 +0.4
carbon source L-Lactate (C) 10 mM -1.4 +0.4 +0.2 -0.1 -0.4
carbon source Guanosine (C) -2.4 +0.3 +0.7 +0.1 +0.1
carbon source L-Arginine (C) 10 mM -0.7 -0.2 -0.5 -0.0 +0.3
carbon source Choline (C) 10 mM -1.2 -0.0 -0.2 +0.0 +0.3
carbon source p-Coumaric (C) 2.5 mM -1.3 -0.0 +0.2 -0.0 +0.2
carbon source Inosine carbon 10 mM -1.2 +0.2 -0.1 +0.2 +0.1
carbon source 4-Acetoxy-3-methoxycinnamic (C) -1.1 +0.4 +0.1 -0.2 -0.1
carbon source pyruvate (C) -0.9 +0.3 -0.2 +0.1 -0.3
carbon source Vanillic Acid (C) 2.5 mM -1.8 -0.5 +0.6 -0.1 +0.8
carbon source L-tyrosine (C) 10 mM -1.2 -0.1 +1.2 -0.2 -0.3
carbon source p-Coumaric (C) -1.1 +0.6 +0.1 -0.1 -0.1
carbon source succinate (C) +0.3 +0.3 -1.2 -0.1 +0.0
carbon source Uridine (C) 10 mM -1.2 +0.1 +0.3 -0.0 +0.2
carbon source 4-Hydroxybenzoic Acid (C) 2.5 mM -1.5 +0.0 +0.8 -0.1 +0.2
carbon source 4-Hydroxybenzoic Acid (C) 2.5 mM -1.0 -0.2 +0.3 +0.1 +0.5
carbon source Xanthosine (C) 10 mM -1.0 -0.3 +0.7 +0.1 +0.3
carbon source 4-Hydroxyphenylpropionic (C) 2.5 mM -1.2 -0.1 +1.1 -0.0 -0.1
carbon source butyrate (C) -0.8 +0.3 +0.5 -0.1 -0.1
carbon source methyl ferulate (C) +0.5 +0.3 -0.7 -0.1 +0.2
carbon source Guanosine (C) -0.5 +0.2 +0.9 +0.1 +0.3
carbon source sn-glycero-3-phosphocholine (C) +0.1 +0.3 +1.1 +0.1 -0.2
carbon source methyl ferulate (C) +0.6 +0.4 +0.6 -0.1 +0.2
carbon source caffeic (C) +0.8 +0.4 +0.1 +0.1 +0.4
in planta Plant=Sorghum; PlantTreatment=None; Sample=root_top; GrowthSubstrate=calcine_clay; Collection=Direct +0.0 +0.5 +0.7 +0.3 +0.5
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