Fitness for 5 genes in Pseudomonas sp. RS175

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500 ntPFR28_03892 and PFR28_03893 are separated by 101 nucleotidesPFR28_03893 and PFR28_03894 are separated by 206 nucleotidesPFR28_03894 and PFR28_03895 are separated by 538 nucleotidesPFR28_03895 and PFR28_03896 are separated by 268 nucleotides PFR28_03892: PFR28_03892 - Protein MtfA, at 4,469,064 to 4,469,885 _03892 PFR28_03893: PFR28_03893 - Inorganic pyrophosphatase, at 4,469,987 to 4,470,514 _03893 PFR28_03894: PFR28_03894 - HTH-type transcriptional regulator PrtR, at 4,470,721 to 4,471,452 _03894 PFR28_03895: PFR28_03895 - hypothetical protein, at 4,471,991 to 4,475,467 _03895 PFR28_03896: PFR28_03896 - hypothetical protein, at 4,475,736 to 4,476,734 _03896
Group Condition PFR28_03892 PFR28_03893 PFR28_03894 PFR28_03895 PFR28_03896
carbon source L-Lysine (C) 10 mM -0.5 N.D. -0.3 +0.0 -0.1
carbon source Cytidine (C) -0.4 N.D. -0.1 +0.2 -0.1
carbon source D-Mannitol (C) 10 mM -0.3 N.D. +0.2 -0.1 -0.1
carbon source methyl-trans-p-coumarate (C) -0.3 N.D. +0.1 +0.1 -0.1
carbon source sn-glycero-3-phosphocholine (C) -0.4 N.D. -0.1 +0.1 +0.4
carbon source Betaine (C) 2.5 mM +0.4 N.D. -0.4 +0.1 -0.2
carbon source Vanillic Acid (C) 2.5 mM -0.4 N.D. +0.3 +0.1 -0.0
carbon source D,L-Malic Acid (C) 10 mM +0.2 N.D. -0.3 -0.1 +0.1
carbon source octanoate (C) -0.4 N.D. +0.2 +0.1 +0.0
carbon source Choline chloride (C) -0.5 N.D. +0.1 +0.1 +0.3
carbon source caffeic (C) 2.5 mM -0.3 N.D. +0.2 +0.2 -0.0
carbon source butyrate (C) -0.3 N.D. -0.2 +0.3 +0.2
stress D-Glucose (C); with Chloride 200 mM -0.2 N.D. -0.1 +0.2 +0.2
carbon source Guanosine (C) -0.3 N.D. +0.2 +0.0 +0.3
carbon source D,L-Malic Acid (C) -0.2 N.D. +0.1 +0.3 +0.1
carbon source 4-Guanidinobutyric (C) -0.1 N.D. -0.1 +0.1 +0.4
carbon source pyruvate (C) -0.1 N.D. -0.1 +0.1 +0.3
carbon source L-Lactate (C) -0.1 N.D. +0.1 +0.1 +0.3
carbon source sn-glycero-3-phosphocholine (C) +0.2 N.D. -0.1 +0.1 +0.3
carbon source pyruvate (C) -0.2 N.D. +0.1 +0.1 +0.4
carbon source 4-Hydroxyphenylpropionic (C) 2.5 mM +0.3 N.D. +0.1 -0.1 +0.2
carbon source Vanillic Acid (C) 2.5 mM -0.1 N.D. +0.3 +0.1 +0.2
carbon source 4-Acetoxy-3-methoxycinnamic (C) +0.4 N.D. +0.1 +0.2 -0.0
carbon source L-Lactate (C) -0.0 N.D. +0.1 +0.2 +0.4
carbon source p-Coumaric (C) +0.2 N.D. +0.1 +0.2 +0.1
carbon source sn-glycero-3-phosphocholine (C) +0.3 N.D. -0.0 +0.1 +0.4
carbon source Inosine (C) +0.3 N.D. +0.0 +0.2 +0.2
carbon source butyrate (C) 10 mM +0.4 N.D. +0.2 +0.1 +0.2
carbon source L-Lactate (C) +0.1 N.D. +0.2 +0.1 +0.7
in planta Plant=Sorghum; PlantTreatment=None; Sample=root_top; GrowthSubstrate=calcine_clay; Collection=Direct +0.3 N.D. +0.5 +0.2 +0.2
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