Fitness for 5 genes in Pseudomonas sp. RS175

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500 ntPFR28_03842 and PFR28_03843 are separated by 429 nucleotidesPFR28_03843 and PFR28_03844 are separated by 17 nucleotidesPFR28_03844 and PFR28_03845 are separated by 22 nucleotidesPFR28_03845 and PFR28_03846 are separated by 218 nucleotides PFR28_03842: PFR28_03842 - Sensor histidine kinase RcsC, at 4,416,741 to 4,419,125 _03842 PFR28_03843: PFR28_03843 - Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase, at 4,419,555 to 4,420,379 _03843 PFR28_03844: PFR28_03844 - Thiamine-phosphate synthase, at 4,420,397 to 4,421,023 _03844 PFR28_03845: PFR28_03845 - Glutamate-1-semialdehyde 2,1-aminomutase, at 4,421,046 to 4,422,329 _03845 PFR28_03846: PFR28_03846 - hypothetical protein, at 4,422,548 to 4,423,102 _03846
Group Condition PFR28_03842 PFR28_03843 PFR28_03844 PFR28_03845 PFR28_03846
carbon source Trisodium citrate 10 mM (C) +0.1 -4.8 -4.6 N.D. -1.8
mixed carbon source mixed (C)s Trisodium citrate 10 mM and L-Phenylalanine 5 mM +0.1 -4.0 -5.1 N.D. -1.6
in planta Plant=Sorghum; PlantTreatment=None; Sample=root_top; GrowthSubstrate=calcine_clay; Collection=Direct +0.1 -3.6 -3.5 N.D. -3.5
mixed carbon source mixed (C)s Trisodium citrate 10 mM and L-Phenylalanine 5 mM +0.1 -4.6 -4.5 N.D. -1.4
mixed carbon source mixed (C)s Trisodium citrate 10 mM and 4-benzoyl-L-phenylalanine 5 mM -0.1 -3.3 -5.2 N.D. -1.7
mixed carbon source mixed (C)s Trisodium citrate 10 mM and L-Phenylalanine 5 mM +0.1 -4.2 -4.4 N.D. -1.7
mixed carbon source mixed (C)s Trisodium citrate 10 mM and L-tyrosine 5 mM +0.0 -4.2 -4.4 N.D. -1.6
carbon source L-tyrosine 5 mM (C) +0.1 -4.2 -4.0 N.D. -1.9
carbon source Trisodium citrate 10 mM (C) +0.0 -3.4 -4.6 N.D. -2.1
mixed carbon source mixed (C)s Trisodium citrate 10 mM and 4-benzoyl-L-phenylalanine 5 mM -0.0 -4.1 -4.1 N.D. -1.7
carbon source Trisodium citrate 10 mM (C) +0.1 -3.5 -4.4 N.D. -2.1
mixed carbon source mixed (C)s Trisodium citrate 10 mM and Parachlorophenylalanine 10 mM -0.1 -3.7 -4.3 N.D. -1.6
mixed carbon source mixed (C)s Trisodium citrate 10 mM and L-Meta-tyrosine 10 mM -0.1 -4.1 -3.9 N.D. -1.5
mixed carbon source mixed (C)s Trisodium citrate 10 mM and 4-azido-L-phenylalanine 10 mM +0.0 -3.4 -4.9 N.D. -1.2
mixed carbon source mixed (C)s Trisodium citrate 10 mM and L-tyrosine 5 mM +0.0 -4.0 -3.9 N.D. -1.6
carbon source L-tyrosine 5 mM (C) +0.1 -3.7 -3.8 N.D. -2.0
mixed carbon source mixed (C)s Trisodium citrate 10 mM and Parachlorophenylalanine 10 mM -0.2 -3.5 -4.1 N.D. -1.6
mixed carbon source mixed (C)s Trisodium citrate 10 mM and L-tyrosine 5 mM -0.0 -4.3 -3.4 N.D. -1.6
mixed carbon source mixed (C)s Trisodium citrate 10 mM and L-Meta-tyrosine 10 mM -0.1 -4.6 -3.2 N.D. -1.3
carbon source propionate carbon 20 mM +0.0 -2.4 -3.0 N.D. -3.8
mixed carbon source mixed (C)s Trisodium citrate 10 mM and 4-azido-L-phenylalanine 10 mM -0.0 -3.5 -4.2 N.D. -1.5
carbon source L-Phenylalanine 5 mM (C) +0.2 -4.0 -3.8 N.D. -1.6
carbon source L-Valine (C) 10 mM -0.0 -3.5 -4.4 N.D. -1.1
carbon source L-Phenylalanine 5 mM (C) +0.2 -3.8 -3.4 N.D. -2.1
mixed carbon source mixed (C)s Trisodium citrate 10 mM and Parachlorophenylalanine 10 mM -0.2 -3.1 -4.1 N.D. -1.7
carbon source propionate carbon 20 mM +0.0 -2.5 -3.3 N.D. -3.2
carbon source L-tyrosine 5 mM (C) +0.1 -3.2 -4.0 N.D. -1.7
mixed carbon source mixed (C)s Trisodium citrate 10 mM and L-Meta-tyrosine 10 mM -0.1 -3.7 -3.8 N.D. -1.1
carbon source L-Phenylalanine 5 mM (C) +0.3 -3.3 -3.6 N.D. -2.0
carbon source Xanthosine (C) 10 mM +0.1 -3.7 -4.0 N.D. +1.0
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