Fitness for 5 genes in Pseudomonas sp. RS175

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500 ntPFR28_03807 and PFR28_03808 are separated by 204 nucleotidesPFR28_03808 and PFR28_03809 overlap by 4 nucleotidesPFR28_03809 and PFR28_03810 are separated by 299 nucleotidesPFR28_03810 and PFR28_03811 are separated by 2 nucleotides PFR28_03807: PFR28_03807 - hypothetical protein, at 4,381,479 to 4,381,934 _03807 PFR28_03808: PFR28_03808 - Adenine permease AdeP, at 4,382,139 to 4,383,434 _03808 PFR28_03809: PFR28_03809 - tRNA/tmRNA (uracil-C(5))-methyltransferase, at 4,383,431 to 4,384,510 _03809 PFR28_03810: PFR28_03810 - 3-dehydroquinate dehydratase 1, at 4,384,810 to 4,385,253 _03810 PFR28_03811: PFR28_03811 - Quinate/shikimate dehydrogenase (NAD(+)), at 4,385,256 to 4,386,107 _03811
Group Condition PFR28_03807 PFR28_03808 PFR28_03809 PFR28_03810 PFR28_03811
carbon source Quinic Acid (C) 10 mM +0.0 +0.2 +0.2 -5.3 -3.9
carbon source Quinic Acid (C) 10 mM -0.2 +0.2 +0.0 -4.7 -4.2
carbon source Shikimic Acid carbon 10 mM -0.3 +0.3 +0.1 -4.8 -3.4
carbon source Shikimic Acid carbon 10 mM -0.1 +0.3 -0.1 -3.6 -3.9
carbon source Shikimic Acid (C) 10 mM -0.0 +0.1 -0.1 -3.6 -3.2
carbon source Shikimic Acid carbon 10 mM -0.1 +0.3 -0.1 -2.9 -3.8
carbon source Shikimic Acid (C) 10 mM -0.0 +0.1 +0.1 -3.3 -2.7
carbon source Shikimic Acid (C) 10 mM +0.2 +0.2 +0.1 -2.6 -2.6
carbon source Quinic Acid (C) +0.2 +0.1 +0.0 -2.3 -1.6
carbon source Quinic Acid (C) +0.0 +0.1 +0.0 -1.7 -1.9
carbon source Quinic Acid (C) -0.1 +0.2 -0.2 -1.4 -1.8
carbon source 4-Hydroxyphenylpropionic (C) 2.5 mM +0.2 +0.1 +0.2 -1.8 +0.1
carbon source Choline (C) 10 mM -0.1 +0.2 +0.1 -0.9 -0.3
carbon source butyrate (C) 10 mM -0.5 +0.2 -0.8 +0.5 -0.3
in planta Plant=Sorghum; PlantTreatment=None; Sample=root_top; GrowthSubstrate=calcine_clay; Collection=Direct +0.3 -0.1 -0.1 -1.0 +0.2
carbon source D,L-Malic Acid (C) 10 mM -0.1 +0.1 -0.0 -0.9 +0.2
carbon source Guanosine (C) -0.6 -0.8 -0.2 +0.3 +0.7
carbon source 4-Hydroxyphenylpropionic (C) 2.5 mM -0.1 +0.5 +0.1 -0.7 -0.1
carbon source Glycocyamine 20 mM (C) -0.0 +0.4 +0.2 -0.6 -0.3
carbon source L-Lactate (C) 10 mM +0.6 -0.2 +0.2 -1.0 +0.2
carbon source Guanosine (C) -0.6 -0.2 -0.1 +1.1 -0.3
carbon source Betaine (C) -0.8 +0.2 +0.0 +0.1 +0.4
carbon source L-tyrosine (C) 10 mM -0.3 +0.3 +0.3 +0.0 -0.4
carbon source 4-Guanidinobutyric (C) +0.7 -0.4 -0.1 -0.2 -0.1
carbon source Glycocyamine 20 mM (C) -0.3 +0.4 +0.2 +0.2 -0.2
carbon source propionate carbon 20 mM -0.5 +0.5 +0.1 +0.5 -0.1
carbon source Betaine (C) 2.5 mM -0.2 +0.2 -0.2 +0.5 +0.3
carbon source Methyl 3-(4-hydroxyphenyl)propionate (C) 2.5 mM -0.2 +0.4 +0.2 +0.9 -0.3
carbon source Inosine (C) +0.4 +0.0 +0.0 +0.6 +0.4
carbon source sn-glycero-3-phosphocholine (C) +0.8 +0.1 +0.1 +0.6 -0.0
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