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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas sp. RS175
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFR28_03754 and PFR28_03755 are separated by 9 nucleotides
PFR28_03755 and PFR28_03756 overlap by 14 nucleotides
PFR28_03756 and PFR28_03757 are separated by 11 nucleotides
PFR28_03757 and PFR28_03758 overlap by 4 nucleotides
PFR28_03754: PFR28_03754 - hypothetical protein, at 4,323,275 to 4,323,676
_03754
PFR28_03755: PFR28_03755 - hypothetical protein, at 4,323,686 to 4,326,790
_03755
PFR28_03756: PFR28_03756 - hypothetical protein, at 4,326,777 to 4,327,256
_03756
PFR28_03757: PFR28_03757 - hypothetical protein, at 4,327,268 to 4,327,981
_03757
PFR28_03758: PFR28_03758 - hypothetical protein, at 4,327,978 to 4,328,436
_03758
Group
Condition
PFR28
_03754
PFR28
_03755
PFR28
_03756
PFR28
_03757
PFR28
_03758
carbon source
L-Lactate (C) 10 mM
-0.7
-0.2
-0.4
-0.0
-0.1
carbon source
caffeic (C) 2.5 mM
-0.1
-0.1
-0.1
-0.2
-0.5
carbon source
Inosine carbon 10 mM
-0.2
+0.0
-0.4
-0.2
-0.2
carbon source
L-Hydroxyproline (C) 10 mM
-0.3
-0.1
-0.3
-0.0
-0.2
carbon source
Betaine (C)
-0.1
-0.1
-0.3
-0.3
-0.2
carbon source
L-Lysine (C) 10 mM
-0.4
-0.2
+0.0
-0.1
-0.2
carbon source
p-Coumaric (C) 2.5 mM
-0.2
-0.1
+0.1
-0.2
-0.3
carbon source
butyrate (C) 10 mM
-0.8
+0.1
+0.1
+0.1
-0.2
carbon source
Guanosine (C)
-0.5
+0.1
+0.2
-0.3
-0.1
carbon source
4-Hydroxyphenylpropionic (C) 2.5 mM
-0.5
-0.2
+0.4
-0.1
-0.1
carbon source
D-(+)-Galactosamine (C) 10 mM
-0.2
-0.1
+0.2
+0.1
-0.4
carbon source
Vanillic Acid (C) 2.5 mM
+0.2
-0.2
+0.0
-0.2
-0.2
carbon source
L-Lactate (C) 10 mM
-0.6
-0.0
+0.0
+0.1
+0.2
carbon source
4-Guanidinobutyric (C)
-0.0
-0.0
+0.3
-0.0
-0.5
carbon source
Inosine (C)
-0.4
-0.1
+0.1
-0.1
+0.3
carbon source
D-Trehalose (C) 5 mM
+0.1
+0.1
-0.2
+0.2
-0.3
carbon source
butyrate (C)
+0.1
+0.1
+0.3
-0.4
-0.2
carbon source
octanoate (C)
-0.2
-0.0
+0.3
-0.2
+0.2
carbon source
4-Hydroxyphenylpropionic (C) 2.5 mM
-0.2
-0.1
+0.5
-0.4
+0.3
carbon source
L-tyrosine (C) 10 mM
-0.3
-0.0
+0.4
+0.3
-0.1
carbon source
caffeic (C)
+0.0
+0.0
+0.2
-0.3
+0.4
carbon source
octanoate (C)
+0.0
+0.1
+0.6
-0.1
-0.3
carbon source
Guanosine (C)
-0.2
+0.1
+0.4
-0.1
+0.3
carbon source
Guanosine (C)
+0.0
+0.1
-0.1
-0.2
+0.5
carbon source
Cytidine (C)
+0.4
+0.2
+0.4
+0.1
-0.6
carbon source
Azelaic carbon 10 mM
-0.3
-0.0
+0.2
+0.1
+0.6
carbon source
methyl-trans-p-coumarate (C)
+0.3
+0.1
+0.4
-0.3
+0.2
carbon source
butyrate (C) 10 mM
+0.1
-0.1
+0.3
+0.5
+0.0
in planta
Plant=Sorghum; PlantTreatment=None; Sample=root_top; GrowthSubstrate=calcine_clay; Collection=Direct
+0.6
-0.0
-0.0
+0.1
+0.3
carbon source
4-Acetoxy-3-methoxycinnamic (C)
+0.4
+0.1
+0.1
-0.0
+0.6
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PFR28_03756
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