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Protein
Homologs
Fitness for 5 genes in
Pseudomonas sp. RS175
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500 nt
PFR28_03665 and PFR28_03666 are separated by 4 nucleotides
PFR28_03666 and PFR28_03667 are separated by 82 nucleotides
PFR28_03667 and PFR28_03668 are separated by 313 nucleotides
PFR28_03668 and PFR28_03669 are separated by 589 nucleotides
PFR28_03665: PFR28_03665 - hypothetical protein, at 4,225,947 to 4,226,534
_03665
PFR28_03666: PFR28_03666 - hypothetical protein, at 4,226,539 to 4,226,982
_03666
PFR28_03667: PFR28_03667 - hypothetical protein, at 4,227,065 to 4,228,618
_03667
PFR28_03668: PFR28_03668 - Methyl-accepting chemotaxis protein McpU, at 4,228,932 to 4,231,094
_03668
PFR28_03669: PFR28_03669 - Fosmidomycin resistance protein, at 4,231,684 to 4,232,901
_03669
Group
Condition
PFR28
_03665
PFR28
_03666
PFR28
_03667
PFR28
_03668
PFR28
_03669
carbon source
Shikimic Acid carbon 10 mM
-0.1
-3.8
-0.0
-0.0
-0.2
carbon source
Xanthosine (C) 10 mM
-0.3
-3.8
+0.1
-0.0
-0.1
carbon source
4-Hydroxyphenylpropionic (C) 2.5 mM
-0.2
-3.5
-0.4
-0.0
+0.1
carbon source
D(+)-Glucuronic carbon 10 mM
-0.2
-2.5
-0.2
-0.1
-0.1
carbon source
4-Hydroxyphenylpropionic (C) 2.5 mM
-0.1
-3.5
+0.4
+0.2
+0.3
carbon source
Glycocyamine 10 mM (C)
+0.1
-2.3
-0.3
+0.0
-0.2
carbon source
Shikimic Acid carbon 10 mM
+0.1
-2.6
+0.1
-0.1
-0.2
carbon source
D-Glucosamine Hydrochloride (C) 10 mM
-0.2
-2.2
-0.2
-0.0
+0.0
carbon source
Choline (C) 10 mM
+0.2
-2.9
+0.2
+0.0
-0.0
in planta
Plant=Sorghum; PlantTreatment=None; Sample=root_top; GrowthSubstrate=calcine_clay; Collection=Direct
-0.1
-2.1
+0.3
-0.2
-0.3
carbon source
Fumarate (C) 20 mM
+0.1
-2.2
-0.2
+0.1
-0.1
carbon source
Quinic Acid (C) 10 mM
+0.1
-2.5
-0.0
+0.1
-0.1
carbon source
Inosine carbon 10 mM
-0.5
-1.9
+0.2
+0.0
-0.2
carbon source
a-Ketoglutaric (C) 10 mM
-0.0
-2.4
+0.1
-0.1
+0.1
carbon source
octanoate (C)
-0.2
-1.8
+0.1
-0.2
-0.2
carbon source
D-Trehalose (C) 5 mM
-0.0
-2.3
-0.1
+0.1
-0.1
mixed carbon source
mixed (C)s Trisodium citrate 10 mM and 4-azido-L-phenylalanine 10 mM
+0.1
-2.5
+0.0
+0.0
+0.0
carbon source
a-Ketoglutaric (C) 10 mM
+0.1
-2.3
-0.1
+0.1
-0.1
carbon source
propionate carbon 20 mM
+0.1
-2.3
-0.2
+0.0
+0.1
carbon source
D-Ribose (C) 10 mM
+0.1
-2.3
+0.0
+0.0
-0.0
carbon source
L-Lactate (C) 10 mM
+0.4
-2.0
+0.1
-0.4
-0.1
carbon source
4-Hydroxyphenylpropionic (C) 2.5 mM
-0.5
-1.4
+0.2
-0.3
+0.1
carbon source
Glycerol (C) 20 mM
+0.3
-1.8
-0.3
-0.1
-0.0
mixed carbon source
mixed (C)s Trisodium citrate 10 mM and L-Meta-tyrosine 10 mM
+0.3
-2.3
+0.1
+0.0
+0.0
carbon source
butyrate (C)
+0.3
-1.6
-0.2
-0.3
-0.1
carbon source
D-Glucuronic (C) 10 mM
+0.5
-1.7
-0.2
-0.1
+0.0
carbon source
caffeic (C)
+0.3
-1.9
+0.3
-0.0
-0.1
carbon source
caffeic (C)
+0.4
-1.6
+0.4
+0.0
-0.2
carbon source
Guanosine (C)
+0.1
+1.3
+0.4
-0.5
-0.4
carbon source
Quinic Acid (C)
-0.1
+2.2
+0.2
+0.0
-0.1
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