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Homologs
Fitness for 5 genes in
Pseudomonas sp. RS175
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500 nt
PFR28_03645 and PFR28_03646 are separated by 183 nucleotides
PFR28_03646 and PFR28_03647 overlap by 1 nucleotides
PFR28_03647 and PFR28_03648 are separated by 11 nucleotides
PFR28_03648 and PFR28_03649 are separated by 118 nucleotides
PFR28_03645: PFR28_03645 - Renalase, at 4,207,438 to 4,208,424
_03645
PFR28_03646: PFR28_03646 - hypothetical protein, at 4,208,608 to 4,209,570
_03646
PFR28_03647: PFR28_03647 - hypothetical protein, at 4,209,570 to 4,210,508
_03647
PFR28_03648: PFR28_03648 - Deoxyribodipyrimidine photo-lyase, at 4,210,520 to 4,211,980
_03648
PFR28_03649: PFR28_03649 - putative oxidoreductase, at 4,212,099 to 4,212,869
_03649
Group
Condition
PFR28
_03645
PFR28
_03646
PFR28
_03647
PFR28
_03648
PFR28
_03649
carbon source
4-Hydroxyphenylpropionic (C) 2.5 mM
-1.3
-0.6
-0.6
-0.3
-0.9
carbon source
Vanillic Acid (C) 2.5 mM
-1.7
-0.6
-0.5
-0.2
-0.6
carbon source
4-Hydroxybenzoic Acid (C) 2.5 mM
-1.5
-0.5
-0.4
-0.1
-0.9
carbon source
Vanillic Acid (C) 2.5 mM
-1.2
-0.7
-0.1
-0.3
-1.0
carbon source
4-Hydroxybenzoic Acid (C) 2.5 mM
-1.1
-0.5
-0.4
-0.5
-0.7
carbon source
4-Hydroxyphenylpropionic (C) 2.5 mM
-0.9
-0.6
-0.5
-0.5
-0.4
carbon source
4-Hydroxybenzoic Acid (C) 2.5 mM
-0.7
-0.7
-0.5
-0.2
-0.7
carbon source
Vanillic Acid (C) 2.5 mM
-1.2
-0.7
-0.3
-0.0
-0.5
carbon source
Methyl 3-(4-hydroxyphenyl)propionate (C) 2.5 mM
-0.6
-0.5
-0.5
-0.2
-0.6
carbon source
caffeic (C) 2.5 mM
-0.8
-0.4
-0.2
-0.1
-0.7
carbon source
p-Coumaric (C) 2.5 mM
-0.5
-0.6
-0.3
-0.3
-0.5
carbon source
p-Coumaric (C) 2.5 mM
-0.0
-0.5
-0.6
-0.3
-0.7
carbon source
caffeic (C) 2.5 mM
-0.6
-0.5
-0.2
-0.1
-0.5
carbon source
caffeic (C) 2.5 mM
-0.7
-0.4
-0.2
-0.1
-0.5
carbon source
L-Lactate (C) 10 mM
-0.9
-0.7
+0.2
+0.0
-0.4
carbon source
Ferulic Acid (C) 2.5 mM
+0.1
-0.6
-0.3
-0.2
-0.6
carbon source
p-Coumaric (C) 2.5 mM
-0.1
-0.7
-0.2
-0.1
-0.5
carbon source
Ferulic Acid (C) 2.5 mM
+0.1
-0.5
-0.6
-0.2
-0.4
carbon source
Ferulic Acid (C) 2.5 mM
+0.1
-0.5
-0.3
-0.1
-0.6
carbon source
propionate carbon 20 mM
-0.7
-0.1
-0.3
-0.1
-0.2
carbon source
4-Hydroxyphenylpropionic (C) 2.5 mM
-0.3
-0.3
-0.0
+0.1
-0.7
carbon source
D-Glucuronic (C) 10 mM
-0.6
-0.0
-0.4
+0.1
-0.2
carbon source
Guanosine (C)
-0.0
-0.7
-0.4
-0.0
+0.1
carbon source
butyrate (C)
+0.2
+0.2
-1.0
-0.3
-0.1
carbon source
Cytidine (C)
-0.3
-0.1
-0.6
-0.1
+0.4
carbon source
L-Carnitine (C) 10 mM
-0.7
-0.3
+0.6
+0.2
-0.1
carbon source
butyrate (C)
+0.6
-0.2
-0.0
-0.3
-0.1
carbon source
4-Guanidinobutyric (C)
+0.5
+0.1
-0.6
+0.1
+0.1
carbon source
Glycocyamine 20 mM (C)
+0.4
+0.4
-0.5
-0.0
-0.2
carbon source
butyrate (C) 10 mM
-0.3
+0.1
+0.7
+0.1
-0.3
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