Fitness for 5 genes in Pseudomonas sp. RS175

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500 ntPFR28_03624 and PFR28_03625 are separated by 109 nucleotidesPFR28_03625 and PFR28_03626 are separated by 216 nucleotidesPFR28_03626 and PFR28_03627 are separated by 57 nucleotidesPFR28_03627 and PFR28_03628 are separated by 35 nucleotides PFR28_03624: PFR28_03624 - Putative manganese exporter, at 4,188,404 to 4,188,988 _03624 PFR28_03625: PFR28_03625 - Metalloprotease LoiP, at 4,189,098 to 4,189,913 _03625 PFR28_03626: PFR28_03626 - Methyl-accepting chemotaxis protein McpU, at 4,190,130 to 4,192,268 _03626 PFR28_03627: PFR28_03627 - SOS response-associated protein YedK, at 4,192,326 to 4,192,949 _03627 PFR28_03628: PFR28_03628 - hypothetical protein, at 4,192,985 to 4,193,260 _03628
Group Condition PFR28_03624 PFR28_03625 PFR28_03626 PFR28_03627 PFR28_03628
carbon source butyrate (C) -0.1 -0.5 -0.0 -4.3 -0.2
carbon source acetate (C) 30 mM -0.2 -0.1 -0.1 -3.0 -0.1
carbon source butyrate (C) 10 mM -0.5 -0.5 +0.1 -1.7 -0.6
carbon source L-Proline carbon 10 mM -1.2 -0.5 -0.2 -1.0 +0.0
carbon source D-Glucose carbon 10 mM -1.0 -0.7 +0.1 -1.2 +0.0
carbon source L-Malic (C) 10 mM +0.1 -0.9 -0.1 -1.8 +0.2
in planta Plant=Sorghum; PlantTreatment=None; Sample=root_top; GrowthSubstrate=calcine_clay; Collection=Direct -0.7 -0.3 -0.0 -1.3 -0.2
carbon source D-Glucose carbon 10 mM -1.1 -0.7 -0.1 -0.6 +0.0
carbon source sn-glycero-3-phosphocholine (C) 10 mM -0.7 -1.0 +0.1 -0.8 +0.0
carbon source butyrate (C) 10 mM -0.1 -1.1 +0.0 -1.2 -0.1
carbon source L-Proline carbon 10 mM -0.1 -0.4 -0.2 -1.5 -0.1
carbon source D,L-Malic Acid (C) -0.1 -0.7 -0.0 -1.6 +0.1
carbon source Shikimic Acid carbon 10 mM +0.1 -1.1 -0.1 -1.5 +0.1
carbon source Xanthosine (C) +0.1 -0.9 -0.1 -1.0 -0.4
carbon source NAG carbon 10 mM -1.0 -0.6 +0.0 -0.8 +0.0
carbon source L-Hydroxyproline (C) 10 mM -0.1 -0.1 -0.1 -2.1 +0.2
carbon source NAG carbon 10 mM -0.7 -0.5 -0.1 -1.0 +0.1
carbon source Guanosine (C) -0.6 -1.2 -0.0 +0.2 -0.4
carbon source a-Ketoglutaric carbon 10 mM +0.2 -0.6 -0.0 -1.4 -0.2
carbon source Malonic (C) 10 mM +0.2 -0.9 +0.1 -1.3 -0.1
carbon source Betaine (C) +0.2 -0.6 +0.1 -1.7 +0.3
carbon source Malonic (C) 10 mM +0.3 -0.9 -0.1 +0.5 -0.6
carbon source 4-Guanidinobutyric (C) -0.3 -0.8 +0.1 +0.9 -0.4
carbon source octanoate (C) -0.3 -0.7 +0.1 +1.0 -0.5
carbon source Fumarate (C) 20 mM +1.0 -0.8 +0.1 -0.4 -0.2
carbon source Vanillic Acid (C) 2.5 mM -0.4 +1.3 +0.2 +0.8 -0.4
carbon source 4-Hydroxyphenylpropionic (C) 2.5 mM -0.2 +0.8 +0.3 +1.0 -0.3
carbon source Vanillic Acid (C) 2.5 mM -0.6 +1.3 +0.0 +0.8 +0.3
carbon source 4-Hydroxyphenylpropionic (C) 2.5 mM +0.5 +0.9 +0.3 +1.0 +0.3
carbon source 4-Hydroxyphenylpropionic (C) 2.5 mM -0.0 +1.5 +0.1 +1.9 +0.3
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