Fitness for 5 genes in Pseudomonas sp. RS175

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500 ntPFR28_03557 and PFR28_03558 are separated by 15 nucleotidesPFR28_03558 and PFR28_03559 overlap by 4 nucleotidesPFR28_03559 and PFR28_03560 are separated by 26 nucleotidesPFR28_03560 and PFR28_03561 are separated by 11 nucleotides PFR28_03557: PFR28_03557 - Mannuronan synthase, at 4,107,083 to 4,108,252 _03557 PFR28_03558: PFR28_03558 - Alginate biosynthesis protein AlgK, at 4,108,268 to 4,109,767 _03558 PFR28_03559: PFR28_03559 - Alginate production protein AlgE, at 4,109,764 to 4,111,263 _03559 PFR28_03560: PFR28_03560 - Mannuronan C5-epimerase, at 4,111,290 to 4,112,879 _03560 PFR28_03561: PFR28_03561 - Alginate biosynthesis protein AlgX, at 4,112,891 to 4,114,339 _03561
Group Condition PFR28_03557 PFR28_03558 PFR28_03559 PFR28_03560 PFR28_03561
stress D-Glucose (C); with Chloride 400 mM -0.5 -0.1 -0.3 -0.1 -0.3
carbon source Methyl 3-(4-hydroxyphenyl)propionate (C) 2.5 mM -0.8 -0.0 -0.1 -0.2 -0.1
carbon source L-Lysine (C) 10 mM +0.2 +0.0 -0.5 -0.6 -0.2
carbon source 4-Guanidinobutyric (C) -0.3 -0.3 -0.2 -0.2 -0.0
carbon source methyl ferulate (C) -0.9 -0.0 -0.1 -0.0 +0.1
carbon source Shikimic Acid (C) 10 mM -0.5 -0.2 +0.4 -0.2 -0.2
carbon source succinate (C) -0.7 +0.2 -0.0 +0.0 -0.1
in planta Plant=Sorghum; PlantTreatment=None; Sample=root_top; GrowthSubstrate=calcine_clay; Collection=Direct +0.1 -0.3 +0.1 -0.1 -0.4
carbon source D-Glucuronic (C) 10 mM -0.6 +0.1 +0.1 -0.2 -0.1
carbon source Vanillic Acid (C) 2.5 mM +0.0 +0.2 -0.2 -0.2 -0.4
carbon source 2-Keto-D-gluconic hemicalcium salt (C) 10 mM +0.2 +0.2 -0.3 -0.3 -0.2
carbon source 4-Hydroxyphenylpropionic (C) 2.5 mM -0.4 +0.4 -0.0 -0.2 -0.2
carbon source a-Ketoglutaric (C) 10 mM -0.4 +0.2 +0.2 -0.3 -0.2
carbon source D-Ribose (C) 10 mM -0.3 +0.2 +0.1 -0.1 -0.3
carbon source caffeic (C) +0.1 -0.0 -0.3 +0.2 -0.4
carbon source Guanosine (C) -0.5 -0.2 -0.1 +0.3 +0.2
carbon source L-Leucine (C) 10 mM +0.3 +0.1 -0.5 +0.1 -0.1
carbon source 4-Acetoxy-3-methoxycinnamic (C) +0.4 +0.1 +0.1 +0.0 -0.4
carbon source L-Carnitine (C) 10 mM +0.4 -0.1 -0.1 +0.3 +0.3
carbon source Adenosine (C) 10 mM +0.4 +0.2 +0.0 +0.1 +0.3
carbon source D-Galactose (C) 10 mM +0.0 +0.4 +0.4 +0.1 +0.1
carbon source Adenosine (C) 10 mM +0.3 +0.1 +0.2 +0.2 +0.2
carbon source Azelaic carbon 10 mM +0.3 +0.4 +0.3 -0.1 +0.2
carbon source L-Valine (C) 10 mM +0.4 +0.4 +0.3 +0.0 +0.0
carbon source butyrate (C) 10 mM +0.3 +0.2 +0.5 -0.0 +0.1
carbon source Adenosine (C) 10 mM +0.4 +0.2 +0.1 +0.3 +0.1
carbon source L-Valine (C) 10 mM +0.3 +0.1 +0.1 +0.2 +0.4
carbon source L-Carnitine (C) 10 mM +0.3 +0.2 +0.3 +0.1 +0.3
carbon source L-Valine (C) 10 mM +0.4 +0.2 +0.1 +0.3 +0.3
carbon source L-Valine (C) 10 mM +0.5 +0.1 +0.3 +0.3 +0.3
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