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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas sp. RS175
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFR28_03498 and PFR28_03499 are separated by 433 nucleotides
PFR28_03499 and PFR28_03500 overlap by 4 nucleotides
PFR28_03500 and PFR28_03501 are separated by 148 nucleotides
PFR28_03501 and PFR28_03502 are separated by 102 nucleotides
PFR28_03498: PFR28_03498 - hypothetical protein, at 4,040,271 to 4,040,759
_03498
PFR28_03499: PFR28_03499 - hypothetical protein, at 4,041,193 to 4,041,756
_03499
PFR28_03500: PFR28_03500 - NADPH-dependent ferric-chelate reductase, at 4,041,753 to 4,042,538
_03500
PFR28_03501: PFR28_03501 - hypothetical protein, at 4,042,687 to 4,043,154
_03501
PFR28_03502: PFR28_03502 - Formate-dependent phosphoribosylglycinamide formyltransferase, at 4,043,257 to 4,044,438
_03502
Group
Condition
PFR28
_03498
PFR28
_03499
PFR28
_03500
PFR28
_03501
PFR28
_03502
carbon source
L-Lactate (C) 10 mM
-0.6
+0.1
-0.6
+0.4
-1.2
carbon source
Guanosine (C)
+0.0
+0.1
-0.4
-0.3
-1.2
carbon source
L-Carnitine (C) 10 mM
-0.2
+0.1
-0.3
-0.8
-0.3
carbon source
D-Xylose (C) 10 mM
+0.0
-0.2
-0.3
-0.7
-0.2
carbon source
Cytidine (C)
-0.0
+0.4
-0.7
-0.1
-0.8
carbon source
Cytidine (C)
-0.2
+0.2
-0.5
-0.3
-0.5
carbon source
Azelaic carbon 10 mM
+0.1
-0.3
-0.3
+0.4
-0.9
carbon source
Guanosine (C)
+0.3
-0.1
-0.1
-0.6
-0.4
carbon source
Betaine (C)
-0.5
+0.5
+0.1
-0.3
-0.7
carbon source
Xanthosine (C)
+0.1
+0.2
+0.0
-1.2
-0.1
carbon source
L-Leucine (C) 10 mM
-0.2
+0.0
-0.4
+0.4
-0.5
carbon source
4-Guanidinobutyric (C)
+0.2
+0.2
-0.3
-0.5
-0.2
carbon source
Shikimic Acid (C) 10 mM
+0.2
+0.0
-0.3
-0.7
+0.2
carbon source
butyrate (C) 10 mM
+0.0
-0.1
+0.3
-1.4
+0.7
carbon source
Cytidine (C)
+0.4
-0.1
-0.6
+0.2
-0.4
carbon source
D-Glucosamine Hydrochloride carbon 10 mM
+0.1
-0.2
-0.0
-0.8
+0.5
carbon source
Guanosine (C)
+0.1
+0.5
-0.7
+0.5
-0.4
carbon source
acetate carbon 10 mM
+0.2
-0.1
+0.2
-0.7
+0.5
carbon source
4-Hydroxyphenylpropionic (C) 2.5 mM
+0.4
+0.3
-0.5
+0.6
-0.6
carbon source
4-Hydroxyphenylpropionic (C) 2.5 mM
+0.4
+0.6
-0.4
-0.4
+0.2
carbon source
Vanillic Acid (C) 2.5 mM
+0.3
+0.3
-0.6
-0.2
+0.8
carbon source
m-Inositol carbon 10 mM
+0.3
+0.1
+0.3
-0.4
+0.3
carbon source
acetate carbon 10 mM
+0.4
+0.0
+0.3
-0.3
+0.5
carbon source
Vanillic Acid (C) 2.5 mM
+0.6
+0.6
-0.3
-0.1
+0.1
carbon source
D-Ribose carbon 10 mM
-0.1
-0.2
+0.4
+0.7
+0.4
carbon source
sn-glycero-3-phosphocholine (C)
+0.1
+0.1
+0.3
+0.8
-0.1
carbon source
D,L-Malic Acid (C) 10 mM
-0.1
+0.2
-0.1
+0.5
+0.7
carbon source
4-Hydroxyphenylpropionic (C) 2.5 mM
+0.6
-0.1
+0.3
-0.3
+0.8
carbon source
D,L-Malic Acid (C)
+0.3
+0.2
+0.1
+0.3
+0.5
carbon source
Glycocyamine 10 mM (C)
+0.1
-0.0
-0.1
+1.0
+0.5
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PFR28_03500
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PFR28_03502
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