Fitness for 5 genes in Pseudomonas sp. RS175

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500 ntPFR28_03478 and PFR28_03479 are separated by 66 nucleotidesPFR28_03479 and PFR28_03480 overlap by 4 nucleotidesPFR28_03480 and PFR28_03481 are separated by 17 nucleotidesPFR28_03481 and PFR28_03482 are separated by 220 nucleotides PFR28_03478: PFR28_03478 - HTH-type transcriptional regulator MetR, at 4,011,145 to 4,012,062 _03478 PFR28_03479: PFR28_03479 - Mycothiol acetyltransferase, at 4,012,129 to 4,012,626 _03479 PFR28_03480: PFR28_03480 - Homoserine/homoserine lactone efflux protein, at 4,012,623 to 4,013,261 _03480 PFR28_03481: PFR28_03481 - hypothetical protein, at 4,013,279 to 4,013,695 _03481 PFR28_03482: PFR28_03482 - Sensor histidine kinase RcsC, at 4,013,916 to 4,015,280 _03482
Group Condition PFR28_03478 PFR28_03479 PFR28_03480 PFR28_03481 PFR28_03482
carbon source Quinic Acid (C) -1.7 -0.2 -0.2 -0.4 -0.1
carbon source Guanosine (C) -0.8 -0.1 -0.1 -0.7 -0.3
carbon source 4-Acetoxy-3-methoxycinnamic (C) -0.2 -0.2 -0.1 -0.2 -1.2
carbon source Trisodium citrate 10 mM (C) -1.4 +0.1 -0.1 -0.4 +0.0
carbon source 4-Guanidinobutyric (C) 10 mM -1.6 +0.0 -0.1 +0.1 -0.2
carbon source 4-Hydroxyphenylpropionic (C) 2.5 mM -0.6 +0.1 +0.4 -0.8 -0.8
carbon source 4-Guanidinobutyric (C) 10 mM -1.3 -0.1 -0.2 +0.2 -0.3
carbon source D-(+)-Galactosamine (C) 10 mM -0.2 +0.1 -0.1 -0.3 -1.1
carbon source 4-Aminobutyric carbon 10 mM -1.7 -0.2 +0.0 +0.2 +0.0
carbon source D,L-Malic Acid (C) -0.5 -0.2 -0.2 -0.8 +0.1
carbon source 4-Hydroxyphenylpropionic (C) 2.5 mM -0.4 -0.1 +0.4 -0.4 -1.0
carbon source 4-Guanidinobutyric (C) -1.0 -0.1 -0.2 -0.3 +0.1
mixed carbon source mixed (C)s Trisodium citrate 10 mM and L-Phenylalanine 5 mM -1.4 +0.1 -0.0 -0.2 +0.1
stress D-Glucose (C); with Chloride 200 mM -0.5 -0.1 -0.5 -0.6 +0.3
carbon source 4-Aminobutyric (C) 10 mM -1.4 -0.1 +0.1 -0.0 +0.1
in planta Plant=Sorghum; PlantTreatment=None; Sample=root_top; GrowthSubstrate=calcine_clay; Collection=Direct -1.0 +0.4 -0.2 -1.0 +0.5
carbon source Cytidine carbon 10 mM -0.0 +0.0 -0.1 +0.2 -1.3
carbon source Methyl 3-(4-hydroxyphenyl)propionate (C) 2.5 mM -0.3 +0.0 +0.4 -0.4 -0.8
carbon source butyrate (C) 10 mM -0.4 +0.2 +0.1 -0.7 -0.4
carbon source L-Lactate (C) -0.8 -0.2 -0.4 +0.2 +0.1
carbon source L-Malic (C) -1.0 -0.2 -0.2 +0.1 +0.2
carbon source 4-Hydroxybenzoic Acid (C) 2.5 mM -0.3 -0.1 +0.3 +0.0 -0.9
carbon source Vanillic Acid (C) 2.5 mM -0.1 -0.4 +0.3 +0.4 -1.0
carbon source caffeic (C) 2.5 mM -0.5 -0.0 +0.2 +0.2 -0.7
carbon source L-Malic (C) 10 mM -0.7 +0.1 -0.2 -0.3 +0.4
carbon source 4-Acetoxy-3-methoxycinnamic (C) -0.1 -0.1 -0.2 +0.6 -1.1
carbon source 4-Acetoxy-3-methoxycinnamic (C) -0.1 -0.1 +0.1 +0.7 -1.1
carbon source 4-Hydroxyphenylpropionic (C) 2.5 mM -0.3 -0.0 +0.1 +0.6 -0.8
carbon source Vanillic Acid (C) 2.5 mM -0.2 +0.0 +0.4 +0.2 -0.9
carbon source Vanillic Acid (C) 2.5 mM +0.1 +0.0 +0.3 +0.6 -0.8
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