Fitness for 5 genes in Pseudomonas sp. RS175

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500 ntPFR28_03476 and PFR28_03477 are separated by 270 nucleotidesPFR28_03477 and PFR28_03478 are separated by 107 nucleotidesPFR28_03478 and PFR28_03479 are separated by 66 nucleotidesPFR28_03479 and PFR28_03480 overlap by 4 nucleotides PFR28_03476: PFR28_03476 - Aclacinomycin methylesterase RdmC, at 4,007,435 to 4,008,454 _03476 PFR28_03477: PFR28_03477 - 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase, at 4,008,725 to 4,011,037 _03477 PFR28_03478: PFR28_03478 - HTH-type transcriptional regulator MetR, at 4,011,145 to 4,012,062 _03478 PFR28_03479: PFR28_03479 - Mycothiol acetyltransferase, at 4,012,129 to 4,012,626 _03479 PFR28_03480: PFR28_03480 - Homoserine/homoserine lactone efflux protein, at 4,012,623 to 4,013,261 _03480
Group Condition PFR28_03476 PFR28_03477 PFR28_03478 PFR28_03479 PFR28_03480
carbon source Quinic Acid (C) +0.0 +0.0 -1.7 -0.2 -0.2
carbon source 4-Aminobutyric carbon 10 mM -0.1 +0.0 -1.7 -0.2 +0.0
carbon source 4-Guanidinobutyric (C) 10 mM +0.0 -0.1 -1.6 +0.0 -0.1
carbon source 4-Guanidinobutyric (C) 10 mM +0.0 -0.1 -1.3 -0.1 -0.2
carbon source Trisodium citrate 10 mM (C) +0.1 -0.1 -1.4 +0.1 -0.1
carbon source 4-Aminobutyric (C) 10 mM -0.0 +0.0 -1.4 -0.1 +0.1
carbon source 4-Aminobutyric carbon 10 mM -0.1 +0.0 -1.2 -0.0 +0.0
carbon source L-Malic (C) -0.0 +0.1 -1.0 -0.2 -0.2
carbon source octanoate (C) +0.0 -0.0 -1.0 -0.1 -0.2
carbon source 4-Aminobutyric carbon 10 mM -0.1 -0.0 -1.2 -0.1 +0.1
stress D-Glucose (C); with Chloride 200 mM -0.2 +0.1 -0.5 -0.1 -0.5
carbon source L-Lactate (C) +0.1 +0.0 -0.8 -0.2 -0.4
carbon source Quinic Acid (C) 10 mM +0.1 -0.1 -1.1 -0.0 -0.1
carbon source Shikimic Acid (C) 10 mM +0.1 +0.1 -1.3 +0.0 -0.1
carbon source 4-Guanidinobutyric (C) +0.0 +0.1 -1.0 -0.1 -0.2
mixed carbon source mixed (C)s Trisodium citrate 10 mM and L-Phenylalanine 5 mM +0.1 +0.1 -1.4 +0.1 -0.0
carbon source Betaine (C) -0.4 +0.0 -0.5 -0.3 +0.0
carbon source octanoate (C) -0.1 +0.1 -1.0 -0.1 -0.0
carbon source Shikimic Acid carbon 10 mM -0.1 +0.1 -1.1 -0.0 +0.0
carbon source Quinic Acid (C) +0.1 +0.1 -1.1 -0.1 -0.0
mixed carbon source mixed (C)s Trisodium citrate 10 mM and L-Phenylalanine 5 mM +0.0 -0.0 -1.1 +0.1 -0.1
carbon source 4-Aminobutyric (C) 10 mM +0.1 +0.0 -1.1 +0.0 -0.1
carbon source 4-Aminobutyric (C) 10 mM +0.0 +0.0 -1.1 +0.1 +0.1
carbon source Trisodium citrate (C) 10 mM +0.1 +0.0 -0.9 +0.1 -0.1
carbon source Trisodium citrate (C) 10 mM +0.1 +0.1 -0.9 +0.1 -0.1
carbon source Shikimic Acid (C) 10 mM +0.2 +0.1 -0.6 +0.0 -0.3
carbon source 4-Hydroxyphenylpropionic (C) 2.5 mM -0.5 +0.1 -0.6 +0.1 +0.4
carbon source octanoate (C) +0.3 +0.3 -0.8 +0.0 -0.1
in planta Plant=Sorghum; PlantTreatment=None; Sample=root_top; GrowthSubstrate=calcine_clay; Collection=Direct +0.3 +0.1 -1.0 +0.4 -0.2
carbon source 4-Hydroxyphenylpropionic (C) 2.5 mM +0.3 +0.2 -0.4 -0.1 +0.4
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