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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas sp. RS175
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500 nt
PFR28_03445 and PFR28_03446 overlap by 4 nucleotides
PFR28_03446 and PFR28_03447 are separated by 25 nucleotides
PFR28_03447 and PFR28_03448 are separated by 2 nucleotides
PFR28_03448 and PFR28_03449 overlap by 4 nucleotides
PFR28_03445: PFR28_03445 - hypothetical protein, at 3,956,464 to 3,957,627
_03445
PFR28_03446: PFR28_03446 - hypothetical protein, at 3,957,624 to 3,958,628
_03446
PFR28_03447: PFR28_03447 - hypothetical protein, at 3,958,654 to 3,960,135
_03447
PFR28_03448: PFR28_03448 - hypothetical protein, at 3,960,138 to 3,964,196
_03448
PFR28_03449: PFR28_03449 - hypothetical protein, at 3,964,193 to 3,968,308
_03449
Group
Condition
PFR28
_03445
PFR28
_03446
PFR28
_03447
PFR28
_03448
PFR28
_03449
carbon source
Xanthosine (C) 10 mM
-0.2
-0.9
-0.1
-0.1
+0.2
carbon source
Quinic Acid (C)
+0.0
-0.9
-0.3
-0.0
+0.1
stress
D-Glucose (C); with Chloride 400 mM
-0.1
-0.7
-0.1
-0.1
+0.0
carbon source
methyl-trans-p-coumarate (C)
-0.1
-0.7
-0.2
+0.1
-0.1
carbon source
succinate (C)
+0.1
-1.2
+0.0
+0.1
+0.1
carbon source
Xanthosine (C)
+0.0
-0.6
-0.6
+0.1
+0.1
carbon source
L-Valine (C) 10 mM
+0.1
-0.6
-0.2
-0.1
-0.1
carbon source
p-Coumaric (C)
+0.1
-0.7
-0.3
+0.1
+0.0
carbon source
butyrate (C)
+0.2
-0.5
-0.4
-0.2
-0.0
carbon source
L-Carnitine (C)
+0.2
-0.6
-0.3
+0.1
+0.1
stress
D-Glucose (C); with Chloride 200 mM
+0.3
-0.7
+0.0
+0.0
+0.0
carbon source
L-Phenylalanine carbon 5 mM
+0.4
-1.0
+0.1
+0.1
+0.1
carbon source
methyl-trans-p-coumarate (C)
+0.3
-0.9
+0.1
+0.0
+0.2
carbon source
Inosine (C)
+0.4
-0.6
-0.1
+0.1
+0.0
carbon source
butyrate (C)
+0.3
-0.2
-0.2
-0.2
+0.1
carbon source
octanoate (C)
+0.1
-0.6
+0.3
+0.0
+0.0
carbon source
4-Hydroxyphenylpropionic (C) 2.5 mM
+0.6
+0.0
-0.4
-0.1
+0.0
carbon source
L-Lactate (C) 10 mM
+0.2
-0.5
+0.4
+0.1
+0.0
carbon source
propionate (C) 20 mM
-0.4
+0.7
-0.1
-0.0
+0.1
carbon source
butyrate (C) 10 mM
+0.3
-0.1
+0.3
-0.3
+0.2
in planta
Plant=Sorghum; PlantTreatment=None; Sample=root_top; GrowthSubstrate=calcine_clay; Collection=Direct
-0.0
+0.6
-0.4
+0.1
+0.2
carbon source
4-Acetoxy-3-methoxycinnamic (C)
+0.1
+0.7
-0.2
-0.1
+0.0
carbon source
a-Ketoglutaric (C) 10 mM
-0.2
+0.5
+0.2
+0.0
+0.1
carbon source
Guanosine (C)
+0.4
+0.4
-0.2
-0.1
+0.2
carbon source
D-Ribose (C) 10 mM
+0.1
+0.7
-0.1
-0.1
+0.1
carbon source
4-Hydroxyphenylpropionic (C) 2.5 mM
+0.4
-0.0
+0.3
-0.1
+0.2
carbon source
D-(+)-Galactosamine (C) 10 mM
-0.2
+0.8
+0.3
+0.0
+0.1
carbon source
4-Hydroxyphenylpropionic (C) 2.5 mM
+0.5
+0.7
-0.1
-0.1
-0.0
carbon source
Inosine carbon 10 mM
+0.3
+0.6
+0.2
+0.0
+0.1
carbon source
L-Valine (C) 10 mM
+0.3
+0.9
+0.0
-0.0
+0.0
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