Fitness for 5 genes in Pseudomonas sp. RS175

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500 ntPFR28_03343 and PFR28_03344 are separated by 120 nucleotidesPFR28_03344 and PFR28_03345 overlap by 4 nucleotidesPFR28_03345 and PFR28_03346 overlap by 14 nucleotidesPFR28_03346 and PFR28_03347 overlap by 4 nucleotides PFR28_03343: PFR28_03343 - Methionine--tRNA ligase, at 3,850,906 to 3,852,951 _03343 PFR28_03344: PFR28_03344 - Ion-translocating oxidoreductase complex subunit A, at 3,853,072 to 3,853,644 _03344 PFR28_03345: PFR28_03345 - Ion-translocating oxidoreductase complex subunit B, at 3,853,641 to 3,854,651 _03345 PFR28_03346: PFR28_03346 - Ion-translocating oxidoreductase complex subunit D, at 3,854,638 to 3,855,624 _03346 PFR28_03347: PFR28_03347 - Ion-translocating oxidoreductase complex subunit G, at 3,855,621 to 3,856,229 _03347
Group Condition PFR28_03343 PFR28_03344 PFR28_03345 PFR28_03346 PFR28_03347
carbon source Guanosine (C) N.D. -4.4 -1.6 -0.6 +0.2
carbon source Xanthosine (C) N.D. -4.5 +0.5 -0.3 -0.2
carbon source L-Carnitine (C) N.D. -4.6 +0.1 -0.2 +0.3
carbon source L-Lactate (C) 10 mM N.D. -3.4 +0.3 -0.7 -0.2
carbon source Glycocyamine 10 mM (C) N.D. -3.2 -0.5 -0.1 -0.0
carbon source methyl ferulate (C) N.D. -3.1 -0.4 +0.1 +0.1
carbon source acetate carbon 10 mM N.D. -2.8 +0.2 -0.2 -0.1
carbon source 2-Keto-D-gluconic hemicalcium salt (C) 10 mM N.D. -2.2 -0.1 -0.3 +0.1
carbon source L-Lactate (C) N.D. -2.1 +0.3 -0.4 -0.2
carbon source D-Trehalose (C) 5 mM N.D. -1.0 -0.9 +0.4 -0.6
carbon source Fumarate (C) 20 mM N.D. -1.3 +0.2 -0.4 -0.5
carbon source Inosine carbon 10 mM N.D. -2.8 +0.3 +0.7 -0.0
carbon source methyl ferulate (C) N.D. -2.2 +0.0 +0.3 -0.0
carbon source Guanosine (C) N.D. -1.1 +0.7 -1.2 -0.1
carbon source D-Glucuronic (C) 10 mM N.D. -2.3 +0.2 +0.2 +0.1
carbon source D-(+)-Galactosamine (C) 10 mM N.D. -1.9 +0.5 -0.2 +0.0
carbon source 4-Guanidinobutyric (C) N.D. -1.8 +0.4 +0.0 -0.1
in planta Plant=Sorghum; PlantTreatment=None; Sample=root_top; GrowthSubstrate=calcine_clay; Collection=Direct N.D. +1.1 -1.5 -1.0 -0.0
carbon source methyl-trans-p-coumarate (C) N.D. -1.7 +0.1 +0.5 +0.1
carbon source Azelaic carbon 10 mM N.D. +0.7 +0.0 -1.1 -0.6
carbon source Shikimic Acid (C) 10 mM N.D. -1.2 +0.6 +0.1 -0.4
carbon source Guanosine (C) N.D. +0.3 -0.8 +1.0 -1.1
carbon source sn-glycero-3-phosphocholine (C) N.D. +0.2 +1.0 -0.8 -0.3
carbon source Betaine (C) N.D. -1.2 +0.1 +0.7 +0.6
carbon source Cytidine (C) N.D. -0.0 -1.1 +1.1 +0.3
carbon source D-Ribose carbon 10 mM N.D. +0.9 +0.3 -0.9 +0.3
carbon source 4-Hydroxyphenylpropionic (C) 2.5 mM N.D. +1.4 -0.5 +0.3 +0.1
carbon source trans-aconitic (C) 5 mM N.D. +1.5 -0.2 +0.2 +0.4
carbon source L-Lactate (C) 10 mM N.D. +1.4 -0.2 +0.4 +0.7
carbon source Uridine (C) 10 mM N.D. +2.0 +0.1 +0.1 +0.1
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