Fitness for 5 genes in Pseudomonas sp. RS175

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500 ntPFR28_03334 and PFR28_03335 overlap by 11 nucleotidesPFR28_03335 and PFR28_03336 are separated by 229 nucleotidesPFR28_03336 and PFR28_03337 are separated by 103 nucleotidesPFR28_03337 and PFR28_03338 are separated by 52 nucleotides PFR28_03334: PFR28_03334 - Adaptive-response sensory-kinase SasA, at 3,841,908 to 3,843,185 _03334 PFR28_03335: PFR28_03335 - Transcriptional activator protein CzcR, at 3,843,175 to 3,843,858 _03335 PFR28_03336: PFR28_03336 - hypothetical protein, at 3,844,088 to 3,844,831 _03336 PFR28_03337: PFR28_03337 - 60 kDa chaperonin, at 3,844,935 to 3,846,581 _03337 PFR28_03338: PFR28_03338 - 10 kDa chaperonin, at 3,846,634 to 3,846,927 _03338
Group Condition PFR28_03334 PFR28_03335 PFR28_03336 PFR28_03337 PFR28_03338
carbon source Shikimic Acid carbon 10 mM -5.7 -5.6 +0.3 N.D. N.D.
carbon source Shikimic Acid carbon 10 mM -5.0 -6.0 +0.0 N.D. N.D.
carbon source Shikimic Acid carbon 10 mM -5.1 -5.1 +0.3 N.D. N.D.
in planta Plant=Sorghum; PlantTreatment=None; Sample=root_top; GrowthSubstrate=calcine_clay; Collection=Direct -3.5 -3.9 +0.2 N.D. N.D.
carbon source L-Carnitine (C) 10 mM -1.4 -1.4 -0.3 N.D. N.D.
carbon source Betaine (C) -0.7 -1.7 +0.0 N.D. N.D.
carbon source L-Carnitine (C) 10 mM -0.9 -0.8 +0.2 N.D. N.D.
carbon source L-pyroglutamic (C) 10 mM -0.8 -0.6 +0.0 N.D. N.D.
carbon source L-Lactate (C) 10 mM -0.1 +0.2 -1.1 N.D. N.D.
carbon source D-Glucuronic (C) 10 mM -0.4 -0.3 -0.3 N.D. N.D.
carbon source Shikimic Acid (C) 10 mM -0.5 -0.7 +0.4 N.D. N.D.
carbon source L-Leucine (C) 10 mM -0.1 +0.1 -0.7 N.D. N.D.
carbon source Inosine carbon 10 mM +0.2 -0.2 -0.5 N.D. N.D.
carbon source Shikimic Acid (C) 10 mM -0.5 -0.4 +0.4 N.D. N.D.
carbon source L-tyrosine (C) 10 mM +0.3 -0.1 -0.6 N.D. N.D.
carbon source succinate (C) -0.4 -0.3 +0.2 N.D. N.D.
carbon source butyrate (C) 10 mM -0.6 -0.2 +0.3 N.D. N.D.
carbon source D-Glucuronic (C) 10 mM -0.3 -0.4 +0.4 N.D. N.D.
carbon source Inosine (C) +0.3 -0.3 -0.3 N.D. N.D.
carbon source Shikimic Acid (C) 10 mM -0.5 -0.1 +0.5 N.D. N.D.
carbon source p-Coumaric (C) -0.2 -0.2 +0.5 N.D. N.D.
carbon source Guanosine (C) +0.3 -0.5 +0.3 N.D. N.D.
carbon source butyrate (C) 10 mM +0.1 +0.5 -0.4 N.D. N.D.
carbon source D-Glucuronic (C) 10 mM -0.1 -0.2 +0.6 N.D. N.D.
carbon source 4-Hydroxyphenylpropionic (C) 2.5 mM +0.3 +0.3 -0.3 N.D. N.D.
carbon source D,L-Malic Acid (C) +0.3 -0.2 +0.4 N.D. N.D.
carbon source Guanosine (C) +0.6 +0.2 -0.1 N.D. N.D.
carbon source 4-Acetoxy-3-methoxycinnamic (C) +0.3 +0.1 +0.5 N.D. N.D.
carbon source sn-glycero-3-phosphocholine (C) +0.2 -0.2 +0.9 N.D. N.D.
carbon source sn-glycero-3-phosphocholine (C) +0.0 +0.2 +1.0 N.D. N.D.
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