Fitness for 5 genes in Pseudomonas sp. RS175

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500 ntPFR28_03331 and PFR28_03332 are separated by 2 nucleotidesPFR28_03332 and PFR28_03333 are separated by 4 nucleotidesPFR28_03333 and PFR28_03334 are separated by 142 nucleotidesPFR28_03334 and PFR28_03335 overlap by 11 nucleotides PFR28_03331: PFR28_03331 - hypothetical protein, at 3,840,152 to 3,840,379 _03331 PFR28_03332: PFR28_03332 - Protein InaA, at 3,840,382 to 3,841,092 _03332 PFR28_03333: PFR28_03333 - hypothetical protein, at 3,841,097 to 3,841,765 _03333 PFR28_03334: PFR28_03334 - Adaptive-response sensory-kinase SasA, at 3,841,908 to 3,843,185 _03334 PFR28_03335: PFR28_03335 - Transcriptional activator protein CzcR, at 3,843,175 to 3,843,858 _03335
Group Condition PFR28_03331 PFR28_03332 PFR28_03333 PFR28_03334 PFR28_03335
carbon source Shikimic Acid carbon 10 mM N.D. -0.3 +0.0 -5.7 -5.6
carbon source Shikimic Acid carbon 10 mM N.D. -0.3 +0.1 -5.0 -6.0
carbon source Shikimic Acid carbon 10 mM N.D. -0.3 -0.2 -5.1 -5.1
in planta Plant=Sorghum; PlantTreatment=None; Sample=root_top; GrowthSubstrate=calcine_clay; Collection=Direct N.D. -0.0 +0.7 -3.5 -3.9
carbon source L-Carnitine (C) 10 mM N.D. +0.0 -0.1 -1.4 -1.4
carbon source Betaine (C) N.D. +0.1 -0.3 -0.7 -1.7
carbon source L-Carnitine (C) 10 mM N.D. -0.4 -0.0 -0.9 -0.8
carbon source Shikimic Acid (C) 10 mM N.D. -0.0 -0.6 -0.5 -0.7
carbon source L-pyroglutamic (C) 10 mM N.D. +0.0 -0.0 -0.8 -0.6
carbon source butyrate (C) N.D. -0.2 -0.5 -0.2 -0.2
carbon source Shikimic Acid (C) 10 mM N.D. +0.1 -0.3 -0.5 -0.4
carbon source p-Coumaric (C) N.D. -0.1 -0.5 -0.2 -0.2
carbon source methyl-trans-p-coumarate (C) N.D. -0.4 -0.5 +0.1 -0.2
carbon source D-Glucuronic (C) 10 mM N.D. -0.1 -0.6 -0.1 -0.2
carbon source L-Leucine (C) 10 mM N.D. -0.5 -0.1 +0.1 -0.5
carbon source Guanosine (C) N.D. +0.1 -0.9 +0.1 -0.0
carbon source L-tyrosine 5 mM (C) N.D. -0.3 +0.1 -0.5 -0.1
carbon source methyl-trans-p-coumarate (C) N.D. -0.7 +0.1 -0.1 +0.2
carbon source methyl-trans-p-coumarate (C) N.D. -0.6 +0.3 -0.2 -0.0
carbon source 4-Guanidinobutyric (C) N.D. -0.0 -0.4 +0.2 -0.3
carbon source Methyl 3-(4-hydroxyphenyl)propionate (C) 2.5 mM N.D. -1.0 +0.8 +0.2 -0.5
carbon source Guanosine (C) N.D. -0.2 +0.1 +0.3 -0.5
carbon source Vanillic Acid (C) 2.5 mM N.D. -0.5 +0.4 -0.0 -0.0
carbon source L-Lysine (C) 10 mM N.D. -0.4 -0.0 -0.1 +0.5
carbon source 4-Hydroxyphenylpropionic (C) 2.5 mM N.D. -0.4 -0.2 +0.3 +0.3
carbon source 4-Hydroxyphenylpropionic (C) 2.5 mM N.D. -0.0 +0.4 -0.4 +0.2
carbon source Guanosine (C) N.D. -0.6 +0.4 +0.6 +0.2
carbon source D-Trehalose (C) 5 mM N.D. +0.4 -0.2 +0.4 +0.1
carbon source butyrate (C) N.D. +0.1 +0.4 +0.6 -0.1
carbon source 2-Keto-D-gluconic hemicalcium salt (C) 10 mM N.D. +0.7 +0.5 +0.3 -0.3
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