Fitness for 5 genes in Pseudomonas sp. RS175

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 385 experiments or choose conditions or try the comparative fitness browser

500 ntPFR28_03329 and PFR28_03330 are separated by 13 nucleotidesPFR28_03330 and PFR28_03331 are separated by 51 nucleotidesPFR28_03331 and PFR28_03332 are separated by 2 nucleotidesPFR28_03332 and PFR28_03333 are separated by 4 nucleotides PFR28_03329: PFR28_03329 - Multidrug export protein AcrE, at 3,835,909 to 3,837,057 _03329 PFR28_03330: PFR28_03330 - Multidrug efflux pump subunit AcrB, at 3,837,071 to 3,840,100 _03330 PFR28_03331: PFR28_03331 - hypothetical protein, at 3,840,152 to 3,840,379 _03331 PFR28_03332: PFR28_03332 - Protein InaA, at 3,840,382 to 3,841,092 _03332 PFR28_03333: PFR28_03333 - hypothetical protein, at 3,841,097 to 3,841,765 _03333
Group Condition PFR28_03329 PFR28_03330 PFR28_03331 PFR28_03332 PFR28_03333
carbon source methyl-trans-p-coumarate (C) -0.2 +0.1 N.D. -0.4 -0.5
carbon source p-Coumaric (C) -0.1 -0.3 N.D. -0.1 -0.5
carbon source sn-glycero-3-phosphocholine (C) -0.1 -0.3 N.D. -0.4 -0.2
carbon source L-Lactate (C) 10 mM -0.2 +0.1 N.D. -0.4 -0.3
carbon source Guanosine (C) -0.0 -0.0 N.D. +0.1 -0.9
carbon source sn-glycero-3-phosphocholine (C) -0.2 -0.2 N.D. -0.2 -0.2
carbon source methyl-trans-p-coumarate (C) -0.1 -0.1 N.D. -0.7 +0.1
carbon source 4-Hydroxyphenylpropionic (C) 2.5 mM -0.3 +0.1 N.D. -0.3 -0.3
carbon source Shikimic Acid carbon 10 mM -0.1 -0.1 N.D. -0.3 -0.2
carbon source butyrate (C) -0.1 -0.0 N.D. -0.2 -0.5
carbon source sn-glycero-3-phosphocholine (C) -0.4 -0.1 N.D. -0.1 -0.2
carbon source Cytidine (C) -0.4 -0.2 N.D. -0.2 -0.0
carbon source 4-Hydroxyphenylpropionic (C) 2.5 mM -0.1 -0.2 N.D. -0.4 -0.2
carbon source D-Glucuronic (C) 10 mM -0.0 -0.1 N.D. -0.1 -0.6
carbon source 4-Acetoxy-3-methoxycinnamic (C) +0.0 -0.3 N.D. -0.2 -0.3
carbon source Quinic Acid (C) -0.1 -0.1 N.D. -0.3 -0.3
carbon source Betaine (C) 2.5 mM +0.0 -0.1 N.D. -0.0 -0.6
carbon source L-Lactate (C) +0.0 -0.1 N.D. +0.0 -0.7
carbon source D-Mannitol (C) 10 mM +0.0 +0.0 N.D. -0.3 -0.4
carbon source methyl-trans-p-coumarate (C) -0.4 +0.0 N.D. -0.6 +0.3
carbon source Guanosine (C) -0.1 -0.0 N.D. -0.6 +0.4
carbon source 4-Hydroxyphenylpropionic (C) 2.5 mM -0.5 -0.0 N.D. -0.0 +0.4
carbon source Methyl 3-(4-hydroxyphenyl)propionate (C) 2.5 mM +0.1 +0.1 N.D. -1.0 +0.8
in planta Plant=Sorghum; PlantTreatment=None; Sample=root_top; GrowthSubstrate=calcine_clay; Collection=Direct -0.4 -0.3 N.D. -0.0 +0.7
carbon source Vanillic Acid (C) 2.5 mM +0.0 +0.1 N.D. -0.5 +0.4
carbon source D-Glucose carbon 10 mM +0.1 +0.1 N.D. -0.3 +0.3
carbon source 2-Keto-D-gluconic hemicalcium salt (C) 10 mM -0.1 +0.1 N.D. +0.6 -0.1
carbon source caffeic (C) 2.5 mM +0.0 +0.2 N.D. +0.3 +0.3
carbon source 2-Keto-D-gluconic hemicalcium salt (C) 10 mM +0.1 +0.1 N.D. +0.6 +0.1
carbon source 2-Keto-D-gluconic hemicalcium salt (C) 10 mM -0.0 -0.1 N.D. +0.7 +0.5
remove
PFR28_03329
plot		 remove
PFR28_03330
plot		 remove
PFR28_03331		 remove
PFR28_03332
plot		 remove
PFR28_03333
plot