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Homologs
Fitness for 5 genes in
Pseudomonas sp. RS175
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500 nt
PFR28_03271 and PFR28_03272 are separated by 62 nucleotides
PFR28_03272 and PFR28_03273 are separated by 184 nucleotides
PFR28_03273 and PFR28_03274 are separated by 87 nucleotides
PFR28_03274 and PFR28_03275 are separated by 146 nucleotides
PFR28_03271: PFR28_03271 - tRNA-Ser, at 3,779,525 to 3,779,615
_03271
PFR28_03272: PFR28_03272 - Translational regulator CsrA2, at 3,779,678 to 3,779,866
_03272
PFR28_03273: PFR28_03273 - Aspartate kinase, at 3,780,051 to 3,781,292
_03273
PFR28_03274: PFR28_03274 - Alanine--tRNA ligase, at 3,781,380 to 3,784,001
_03274
PFR28_03275: PFR28_03275 - Low specificity L-threonine aldolase, at 3,784,148 to 3,785,152
_03275
Group
Condition
PFR28
_03271
PFR28
_03272
PFR28
_03273
PFR28
_03274
PFR28
_03275
carbon source
4-Hydroxyphenylpropionic (C) 2.5 mM
N.D.
-3.7
-0.8
N.D.
+0.1
carbon source
L-Hydroxyproline carbon 10 mM
N.D.
-1.0
-2.6
N.D.
+0.1
carbon source
4-Hydroxyphenylpropionic (C) 2.5 mM
N.D.
-2.4
-0.9
N.D.
+0.1
carbon source
m-Inositol carbon 10 mM
N.D.
-0.4
-2.9
N.D.
+0.1
carbon source
L-Hydroxyproline (C) 10 mM
N.D.
-1.4
-1.7
N.D.
+0.1
carbon source
L-Phenylalanine carbon 5 mM
N.D.
-2.7
-0.2
N.D.
+0.1
carbon source
D-Mannitol (C) 10 mM
N.D.
-1.2
-1.2
N.D.
-0.0
carbon source
p-Coumaric (C) 2.5 mM
N.D.
-1.3
-1.0
N.D.
+0.0
carbon source
Shikimic Acid carbon 10 mM
N.D.
-1.9
-0.4
N.D.
+0.0
carbon source
Shikimic Acid (C) 10 mM
N.D.
-0.8
-1.2
N.D.
-0.1
carbon source
L-Glutamic carbon 10 mM
N.D.
-1.1
-0.9
N.D.
+0.1
carbon source
Inosine (C)
N.D.
-1.7
-0.3
N.D.
+0.1
carbon source
succinate (C)
N.D.
-1.8
-0.1
N.D.
-0.0
carbon source
Quinic Acid (C) 10 mM
N.D.
-1.0
-1.0
N.D.
+0.2
carbon source
L-Hydroxyproline carbon 10 mM
N.D.
-0.6
-1.3
N.D.
+0.1
carbon source
p-Coumaric (C) 2.5 mM
N.D.
-1.1
-0.7
N.D.
+0.1
carbon source
a-Ketoglutaric (C) 10 mM
N.D.
-1.0
-0.7
N.D.
+0.0
carbon source
m-Inositol (C) 10 mM
N.D.
+0.1
-1.8
N.D.
+0.1
carbon source
m-Inositol (C) 10 mM
N.D.
-0.4
-1.4
N.D.
+0.1
carbon source
Ferulic Acid (C) 2.5 mM
N.D.
-0.9
-0.8
N.D.
+0.1
carbon source
L-Hydroxyproline carbon 10 mM
N.D.
+0.2
-1.6
N.D.
+0.1
carbon source
Betaine (C) 2.5 mM
N.D.
+0.5
-1.8
N.D.
-0.1
carbon source
Guanosine (C)
N.D.
-1.4
+0.4
N.D.
+0.1
carbon source
L-Hydroxyproline (C) 10 mM
N.D.
+0.7
-1.2
N.D.
+0.0
carbon source
octanoate (C)
N.D.
+0.7
-1.0
N.D.
+0.0
carbon source
methyl-trans-p-coumarate (C)
N.D.
-1.0
+0.8
N.D.
+0.0
carbon source
L-Carnitine (C)
N.D.
+1.0
-0.9
N.D.
-0.0
carbon source
L-Lactate (C)
N.D.
+1.0
-1.0
N.D.
+0.1
carbon source
Guanosine (C)
N.D.
-0.8
+0.9
N.D.
+0.0
carbon source
Glycocyamine 10 mM (C)
N.D.
+1.3
-0.4
N.D.
-0.1
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