Fitness for 5 genes in Pseudomonas sp. RS175

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500 ntPFR28_03061 and PFR28_03062 are separated by 214 nucleotidesPFR28_03062 and PFR28_03063 are separated by 226 nucleotidesPFR28_03063 and PFR28_03064 are separated by 57 nucleotidesPFR28_03064 and PFR28_03065 are separated by 292 nucleotides PFR28_03061: PFR28_03061 - Histidinol-phosphate aminotransferase, at 3,560,180 to 3,561,571 _03061 PFR28_03062: PFR28_03062 - 2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase, at 3,561,786 to 3,562,547 _03062 PFR28_03063: PFR28_03063 - Putative NADP-dependent oxidoreductase YfmJ, at 3,562,774 to 3,563,778 _03063 PFR28_03064: PFR28_03064 - 'Orotidine 5'-phosphate decarboxylase' transl_table=11, at 3,563,836 to 3,564,534 _03064 PFR28_03065: PFR28_03065 - Transcriptional regulatory protein OmpR, at 3,564,827 to 3,565,585 _03065
Group Condition PFR28_03061 PFR28_03062 PFR28_03063 PFR28_03064 PFR28_03065
carbon source 4-Hydroxyphenylpropionic (C) 2.5 mM -0.6 -0.4 +0.0 N.D. -0.1
carbon source Vanillic Acid (C) 2.5 mM -0.2 -0.2 -0.2 N.D. -0.4
carbon source 4-Hydroxyphenylpropionic (C) 2.5 mM -0.4 -0.3 -0.2 N.D. +0.1
carbon source 4-Hydroxyphenylpropionic (C) 2.5 mM -0.4 -0.3 +0.1 N.D. -0.2
carbon source 4-Hydroxybenzoic Acid (C) 2.5 mM -0.1 -0.4 +0.0 N.D. -0.2
carbon source D-(+)-Galactosamine (C) 10 mM +0.1 -0.1 -0.3 N.D. -0.2
carbon source p-Coumaric (C) 2.5 mM +0.1 -0.2 -0.2 N.D. -0.2
carbon source sn-glycero-3-phosphocholine (C) -0.5 -0.1 +0.1 N.D. -0.0
carbon source butyrate (C) 10 mM +0.2 -0.1 -0.2 N.D. -0.4
carbon source Cytidine (C) -0.1 -0.4 +0.2 N.D. -0.1
mixed carbon source mixed (C)s Trisodium citrate 10 mM and 3-Chloro-L-tyrosine 10 mM -0.2 -0.2 -0.2 N.D. +0.1
carbon source caffeic (C) 2.5 mM +0.2 -0.2 -0.1 N.D. -0.2
carbon source Inosine (C) -0.0 -0.4 +0.2 N.D. -0.1
carbon source Vanillic Acid (C) 2.5 mM +0.3 -0.4 +0.0 N.D. -0.3
mixed carbon source mixed (C)s Trisodium citrate 10 mM and 4-azido-L-phenylalanine 10 mM -0.2 -0.3 -0.1 N.D. +0.2
carbon source L-Lactate (C) 10 mM +0.0 -0.1 +0.3 N.D. -0.4
carbon source 4-Acetoxy-3-methoxycinnamic (C) -0.4 +0.2 +0.2 N.D. -0.0
carbon source butyrate (C) 10 mM -0.1 -0.3 +0.2 N.D. +0.2
carbon source trans-aconitic (C) -0.3 +0.1 +0.0 N.D. +0.2
in planta Plant=Sorghum; PlantTreatment=None; Sample=root_top; GrowthSubstrate=calcine_clay; Collection=Direct +0.1 -0.2 +0.2 N.D. -0.1
carbon source Cytidine (C) +0.1 -0.3 -0.1 N.D. +0.3
carbon source methyl-trans-p-coumarate (C) -0.2 -0.1 +0.2 N.D. +0.2
carbon source Glycocyamine 20 mM (C) -0.1 -0.2 +0.1 N.D. +0.4
carbon source Guanosine (C) -0.2 +0.4 +0.0 N.D. +0.1
carbon source Guanosine (C) -0.3 +0.6 -0.1 N.D. +0.0
carbon source Malonic (C) 10 mM +0.1 +0.3 +0.1 N.D. -0.1
carbon source butyrate (C) -0.1 +0.3 +0.1 N.D. +0.2
carbon source methyl ferulate (C) +0.1 -0.0 +0.2 N.D. +0.4
carbon source Quinic Acid (C) +0.1 +0.1 +0.3 N.D. +0.1
carbon source Azelaic carbon 10 mM +0.2 +0.1 +0.1 N.D. +0.3
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