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Protein
Homologs
Fitness for 5 genes in
Pseudomonas sp. RS175
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFR28_03037 and PFR28_03038 are separated by 83 nucleotides
PFR28_03038 and PFR28_03039 are separated by 505 nucleotides
PFR28_03039 and PFR28_03040 are separated by 56 nucleotides
PFR28_03040 and PFR28_03041 are separated by 21 nucleotides
PFR28_03037: PFR28_03037 - Acyl-coenzyme A dehydrogenase, at 3,538,773 to 3,541,220
_03037
PFR28_03038: PFR28_03038 - hypothetical protein, at 3,541,304 to 3,541,711
_03038
PFR28_03039: PFR28_03039 - Type 3 secretion system secretin, at 3,542,217 to 3,543,440
_03039
PFR28_03040: PFR28_03040 - hypothetical protein, at 3,543,497 to 3,544,207
_03040
PFR28_03041: PFR28_03041 - hypothetical protein, at 3,544,229 to 3,544,498
_03041
Group
Condition
PFR28
_03037
PFR28
_03038
PFR28
_03039
PFR28
_03040
PFR28
_03041
carbon source
4-Hydroxyphenylpropionic (C) 2.5 mM
-0.0
-0.4
-0.4
-1.0
-0.0
carbon source
L-Lactate (C) 10 mM
-0.3
+0.1
-0.8
-0.2
-0.4
carbon source
Cytidine (C)
-0.2
-0.3
-0.3
-0.1
-0.7
carbon source
D,L-Malic Acid (C) 10 mM
-0.1
+0.1
-0.4
-0.2
-0.8
carbon source
4-Hydroxybenzoic Acid (C) 2.5 mM
-0.1
-0.2
-0.3
-0.0
-0.7
carbon source
caffeic (C) 2.5 mM
-0.3
+0.0
-0.3
-0.4
-0.3
carbon source
D,L-Malic Acid (C) 10 mM
-0.3
-0.0
-0.3
-0.2
-0.5
carbon source
p-Coumaric (C) 2.5 mM
-0.4
-0.0
-0.3
-0.4
-0.2
carbon source
Vanillic Acid (C) 2.5 mM
-0.0
+0.2
-0.4
-0.4
-0.6
carbon source
Xanthosine (C) 10 mM
-0.1
-0.2
-0.1
-0.1
-0.7
carbon source
L-Valine (C) 10 mM
-0.1
-0.1
+0.0
-0.3
-0.7
carbon source
L-Malic (C) 10 mM
-0.2
-0.2
-0.2
+0.1
-0.5
carbon source
D,L-Malic Acid (C)
+0.0
+0.1
-0.1
-0.3
-0.8
carbon source
L-Lysine (C) 10 mM
+0.1
-0.1
-0.3
-0.1
-0.7
carbon source
L-Carnitine (C)
-0.2
+0.1
-0.2
+0.0
-0.8
carbon source
pyruvate (C)
-0.0
-0.0
+0.2
-0.6
-0.6
carbon source
L-Lactate (C)
-0.2
+0.2
+0.1
-0.2
-0.6
carbon source
Betaine (C) 2.5 mM
+0.1
+0.1
+0.1
-0.3
-0.7
carbon source
L-Carnitine (C)
-0.3
+0.1
-0.0
+0.2
-0.7
carbon source
butyrate (C) 10 mM
+0.0
+0.1
-0.1
+0.2
-1.0
carbon source
Vanillic Acid (C) 2.5 mM
-0.3
+0.3
-0.1
-0.9
+0.4
carbon source
Cytidine (C)
+0.1
-0.0
+0.3
+0.2
-1.0
carbon source
methyl ferulate (C)
+0.0
+0.4
+0.0
-0.1
-0.7
carbon source
4-Acetoxy-3-methoxycinnamic (C)
-0.1
+0.2
+0.1
+0.2
-0.6
carbon source
D-(+)-Galactosamine (C) 10 mM
+0.1
-0.1
-0.0
+0.5
-0.7
carbon source
Cytidine (C)
-0.2
-0.2
+0.2
+0.5
-0.5
carbon source
Guanosine (C)
-0.4
+0.1
-0.2
+0.8
-0.3
carbon source
4-Guanidinobutyric (C)
-0.3
+0.1
+0.5
+0.5
-0.6
carbon source
a-Ketoglutaric (C) 10 mM
+0.0
-0.0
-0.4
+0.5
+0.2
in planta
Plant=Sorghum; PlantTreatment=None; Sample=root_top; GrowthSubstrate=calcine_clay; Collection=Direct
-0.2
-0.0
+0.4
+0.3
+0.4
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PFR28_03039
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