Fitness for 5 genes in Pseudomonas sp. RS175

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500 ntPFR28_02979 and PFR28_02980 are separated by 30 nucleotidesPFR28_02980 and PFR28_02981 overlap by 126 nucleotidesPFR28_02981 and PFR28_02982 are separated by 177 nucleotidesPFR28_02982 and PFR28_02983 are separated by 6 nucleotides PFR28_02979: PFR28_02979 - Electron transfer flavoprotein-ubiquinone oxidoreductase, at 3,483,570 to 3,485,234 _02979 PFR28_02980: PFR28_02980 - hypothetical protein, at 3,485,265 to 3,485,543 _02980 PFR28_02981: PFR28_02981 - HTH-type transcriptional activator RhaS, at 3,485,418 to 3,486,308 _02981 PFR28_02982: PFR28_02982 - NADP-dependent alcohol dehydrogenase C 2, at 3,486,486 to 3,487,538 _02982 PFR28_02983: PFR28_02983 - HTH-type transcriptional regulator XynR, at 3,487,545 to 3,488,348 _02983
Group Condition PFR28_02979 PFR28_02980 PFR28_02981 PFR28_02982 PFR28_02983
carbon source D-Ribose carbon 10 mM N.D. N.D. -0.1 +0.0 -4.7
carbon source Uridine (C) 10 mM N.D. N.D. -0.3 -0.4 -4.0
carbon source D-Ribose carbon 10 mM N.D. N.D. -0.0 -0.2 -3.8
carbon source D-Ribose (C) 10 mM N.D. N.D. -0.1 +0.1 -4.0
carbon source D-Ribose carbon 10 mM N.D. N.D. -0.1 +0.0 -3.8
carbon source Cytidine (C) N.D. N.D. -0.0 -0.2 -3.4
carbon source D-Ribose (C) 10 mM N.D. N.D. -0.2 +0.2 -3.5
carbon source D-Ribose (C) 10 mM N.D. N.D. -0.2 +0.1 -3.4
carbon source Uridine (C) 10 mM N.D. N.D. -0.1 +0.0 -3.3
carbon source Cytidine (C) N.D. N.D. +0.1 +0.0 -3.5
carbon source Uridine (C) 10 mM N.D. N.D. +0.0 +0.0 -3.3
carbon source Cytidine (C) N.D. N.D. +0.1 -0.1 -3.0
carbon source Cytidine carbon 10 mM N.D. N.D. +0.2 -0.0 -3.0
carbon source Cytidine carbon 10 mM N.D. N.D. -0.1 -0.3 -2.4
carbon source Cytidine carbon 10 mM N.D. N.D. -0.2 -0.0 -1.6
carbon source gluconate (C) 10 mM N.D. N.D. -0.1 -0.2 -1.3
carbon source Guanosine (C) N.D. N.D. -0.4 -0.0 -1.1
carbon source Guanosine carbon 10 mM N.D. N.D. +0.1 -0.1 -1.2
carbon source gluconate (C) 10 mM N.D. N.D. +0.0 +0.1 -1.3
in planta Plant=Sorghum; PlantTreatment=None; Sample=root_top; GrowthSubstrate=calcine_clay; Collection=Direct N.D. N.D. -0.4 -0.2 -0.5
carbon source gluconate (C) 10 mM N.D. N.D. +0.0 +0.1 -1.0
carbon source D(+)-Glucuronic carbon 10 mM N.D. N.D. -0.3 -0.2 -0.5
carbon source Guanosine carbon 10 mM N.D. N.D. +0.1 +0.1 -1.1
carbon source Vanillic Acid (C) 2.5 mM N.D. N.D. -0.4 -0.1 -0.4
carbon source L-Hydroxyproline (C) 10 mM N.D. N.D. -0.5 +0.1 -0.3
carbon source p-Coumaric (C) 2.5 mM N.D. N.D. -0.1 +0.1 -0.5
carbon source Inosine carbon 10 mM N.D. N.D. -0.4 +0.2 -0.3
carbon source caffeic (C) 2.5 mM N.D. N.D. -0.1 +0.2 -0.5
carbon source pyruvate (C) N.D. N.D. +0.2 -0.3 -0.3
mixed carbon source mixed (C)s Trisodium citrate 10 mM and 4-azido-L-phenylalanine 10 mM N.D. N.D. +0.3 +0.3 -0.3
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