Fitness for 5 genes in Pseudomonas sp. RS175

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500 ntPFR28_02824 and PFR28_02825 are separated by 158 nucleotidesPFR28_02825 and PFR28_02826 are separated by 66 nucleotidesPFR28_02826 and PFR28_02827 are separated by 59 nucleotidesPFR28_02827 and PFR28_02828 are separated by 119 nucleotides PFR28_02824: PFR28_02824 - 3-isopropylmalate dehydratase large subunit, at 3,297,956 to 3,299,374 _02824 PFR28_02825: PFR28_02825 - HTH-type transcriptional activator CmpR, at 3,299,533 to 3,300,423 _02825 PFR28_02826: PFR28_02826 - hypothetical protein, at 3,300,490 to 3,303,768 _02826 PFR28_02827: PFR28_02827 - Small heat shock protein IbpA, at 3,303,828 to 3,304,280 _02827 PFR28_02828: PFR28_02828 - tRNA-dihydrouridine(16) synthase, at 3,304,400 to 3,305,359 _02828
Group Condition PFR28_02824 PFR28_02825 PFR28_02826 PFR28_02827 PFR28_02828
carbon source L-Lactate (C) -6.5 -0.1 -0.2 -0.4 +0.2
carbon source 4-Aminobutyric carbon 10 mM -6.2 +0.0 -0.1 +0.1 -0.3
carbon source D,L-Lactate carbon 20 mM -5.2 +0.1 -0.4 -0.4 -0.3
carbon source Glycerol carbon 20 mM -5.5 -0.2 -0.1 -0.1 -0.4
carbon source trans-aconitic (C) 5 mM -5.9 +0.0 -0.2 -0.2 +0.2
carbon source gluconate carbon 10 mM -5.9 -0.1 -0.3 +0.3 -0.2
carbon source caffeic (C) 2.5 mM -5.7 -0.4 -0.3 -0.0 +0.3
carbon source gluconate carbon 10 mM -6.1 +0.1 -0.2 +0.2 -0.1
carbon source pyruvate (C) -5.9 +0.1 +0.2 +0.1 -0.4
carbon source Fumarate (C) 20 mM -6.0 +0.2 -0.1 -0.1 +0.1
carbon source pyruvate (C) -6.1 +0.1 +0.0 +0.1 -0.1
carbon source L-Lactate (C) 10 mM -6.1 +0.1 -0.2 +0.1 +0.3
carbon source D-Galacturonic Acid (C) 10 mM -5.8 -0.1 -0.1 +0.1 -0.1
carbon source acetate carbon 10 mM -5.5 -0.2 +0.1 +0.1 -0.4
carbon source pyruvate carbon 10 mM -5.6 -0.1 -0.2 +0.2 -0.2
carbon source sn-glycero-3-phosphocholine (C) -6.2 -0.2 +0.4 +0.2 +0.0
carbon source 2-Keto-D-gluconic hemicalcium salt (C) 10 mM -6.3 +0.3 +0.1 -0.0 +0.3
carbon source Xanthosine (C) -5.6 +0.0 +0.4 +0.3 -0.7
carbon source 4-Guanidinobutyric (C) 10 mM -6.1 +0.0 +0.0 +0.2 +0.2
carbon source a-Ketoglutaric (C) 10 mM -5.3 +0.0 +0.3 -0.5 +0.1
carbon source D,L-Malic Acid (C) -6.1 +0.4 +0.2 -0.0 +0.2
carbon source acetate (C) 30 mM -5.7 -0.0 +0.3 +0.2 -0.1
carbon source L-Arabinose (C) 10 mM -5.7 +0.1 +0.0 +0.4 -0.1
stress D-Glucose (C); with Chloride 400 mM -5.6 +0.2 +0.1 -0.2 +0.3
carbon source Fumarate (C) 20 mM -5.9 +0.2 -0.2 +0.2 +0.3
carbon source Choline (C) 10 mM -5.7 -0.1 +0.2 +0.3 +0.1
carbon source D-Fructose (C) 10 mM -5.5 -0.0 +0.2 +0.4 -0.2
carbon source L-Valine (C) 10 mM -5.7 +0.1 +0.2 +0.1 +0.4
carbon source 2-Keto-D-gluconic hemicalcium salt (C) 10 mM -5.5 +0.2 +0.3 +0.5 +0.2
in planta Plant=Sorghum; PlantTreatment=None; Sample=root_top; GrowthSubstrate=calcine_clay; Collection=Direct -5.5 +0.3 +2.4 -0.2 +0.2
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