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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas sp. RS175
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500 nt
PFR28_02703 and PFR28_02704 overlap by 4 nucleotides
PFR28_02704 and PFR28_02705 are separated by 81 nucleotides
PFR28_02705 and PFR28_02706 are separated by 58 nucleotides
PFR28_02706 and PFR28_02707 are separated by 162 nucleotides
PFR28_02703: PFR28_02703 - hypothetical protein, at 3,177,778 to 3,178,062
_02703
PFR28_02704: PFR28_02704 - hypothetical protein, at 3,178,059 to 3,178,373
_02704
PFR28_02705: PFR28_02705 - hypothetical protein, at 3,178,455 to 3,178,817
_02705
PFR28_02706: PFR28_02706 - hypothetical protein, at 3,178,876 to 3,180,258
_02706
PFR28_02707: PFR28_02707 - hypothetical protein, at 3,180,421 to 3,181,104
_02707
Group
Condition
PFR28
_02703
PFR28
_02704
PFR28
_02705
PFR28
_02706
PFR28
_02707
carbon source
Guanosine (C)
-5.3
-2.3
-0.3
+0.4
-0.8
carbon source
caffeic (C)
-1.0
-4.3
-2.8
-0.3
+0.2
carbon source
4-Hydroxyphenylpropionic (C) 2.5 mM
+0.2
-5.6
-0.6
-0.5
-0.3
carbon source
Guanosine (C)
-0.6
-4.2
-2.1
+0.3
+0.8
carbon source
4-Hydroxyphenylpropionic (C) 2.5 mM
+1.6
-5.6
-0.8
+0.0
-0.9
carbon source
Cytidine (C)
-4.1
-1.2
+0.4
-0.9
+0.4
carbon source
L-Lactate (C) 10 mM
-0.8
-3.6
-0.9
-0.2
+0.4
carbon source
butyrate (C) 10 mM
-1.5
+0.6
-3.4
-0.0
+0.2
carbon source
butyrate (C) 10 mM
+1.3
-4.1
-0.4
-0.3
-0.5
carbon source
D-Xylose carbon 10 mM
+0.4
-1.8
-1.6
-0.2
-0.1
carbon source
Shikimic Acid (C) 10 mM
-0.7
-1.1
-1.4
+0.4
-0.4
carbon source
Glycocyamine 20 mM (C)
-0.2
-3.1
+0.3
+0.1
-0.0
carbon source
4-Hydroxybenzoic Acid (C) 2.5 mM
+0.7
-1.7
-1.6
+0.1
-0.0
carbon source
octanoate (C)
+0.5
-2.9
+0.6
-0.5
-0.1
carbon source
L-Lactate (C)
+0.6
-3.2
+0.5
-0.3
+0.2
carbon source
sn-glycero-3-phosphocholine (C)
+0.5
-0.6
-2.9
+0.2
+0.6
carbon source
L-tyrosine (C) 10 mM
-2.9
+0.4
+0.6
+0.2
-0.1
carbon source
2-Keto-D-gluconic hemicalcium salt (C) 10 mM
+1.1
-0.9
-1.8
+0.5
-0.2
carbon source
p-Coumaric (C) 2.5 mM
+1.3
-1.1
-1.2
-0.1
+0.2
carbon source
Ferulic Acid (C) 2.5 mM
+1.6
-1.8
-0.8
-0.1
+0.3
carbon source
NAG (C) 10 mM
+1.0
+0.2
-1.7
+0.2
-0.7
carbon source
L-Lysine (C) 10 mM
-3.2
+1.2
+0.7
+0.4
+0.1
carbon source
Xanthosine (C)
-0.9
+1.3
-1.7
-0.1
+0.7
carbon source
Vanillic Acid (C) 2.5 mM
+1.8
-3.6
+0.3
+0.3
+0.6
carbon source
Vanillic Acid (C) 2.5 mM
+1.3
-2.3
+0.7
-0.0
+0.0
carbon source
4-Hydroxybenzoic Acid (C) 2.5 mM
+1.3
-0.4
-1.8
+0.2
+0.4
carbon source
propionate carbon 20 mM
+1.9
-0.4
-1.0
+0.2
-0.4
carbon source
Vanillic Acid (C) 2.5 mM
+1.8
-1.3
-0.3
-0.1
+0.5
in planta
Plant=Sorghum; PlantTreatment=None; Sample=root_top; GrowthSubstrate=calcine_clay; Collection=Direct
+1.1
+0.1
+1.8
-0.1
-1.3
carbon source
Inosine carbon 10 mM
+1.7
+0.8
+0.6
-0.1
-0.5
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