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Protein
Homologs
Fitness for 5 genes in
Pseudomonas sp. RS175
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFR28_02588 and PFR28_02589 are separated by 95 nucleotides
PFR28_02589 and PFR28_02590 are separated by 294 nucleotides
PFR28_02590 and PFR28_02591 are separated by 212 nucleotides
PFR28_02591 and PFR28_02592 are separated by 7 nucleotides
PFR28_02588: PFR28_02588 - Gluconolactonase, at 3,064,819 to 3,065,904
_02588
PFR28_02589: PFR28_02589 - Sensor histidine kinase RcsC, at 3,066,000 to 3,067,130
_02589
PFR28_02590: PFR28_02590 - hypothetical protein, at 3,067,425 to 3,068,384
_02590
PFR28_02591: PFR28_02591 - hypothetical protein, at 3,068,597 to 3,069,457
_02591
PFR28_02592: PFR28_02592 - Peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB, at 3,069,465 to 3,069,998
_02592
Group
Condition
PFR28
_02588
PFR28
_02589
PFR28
_02590
PFR28
_02591
PFR28
_02592
carbon source
propionate carbon 20 mM
-0.0
-0.2
-0.7
-0.5
-0.1
carbon source
L-Hydroxyproline (C) 10 mM
-0.2
+0.2
-1.0
-0.6
+0.2
carbon source
Vanillic Acid (C) 2.5 mM
+0.2
+0.1
-0.2
-0.5
-0.9
carbon source
Xanthosine (C) 10 mM
+0.1
-0.8
-0.3
-0.2
-0.2
carbon source
L-Phenylalanine carbon 5 mM
+0.1
-0.2
-0.2
-0.3
-0.4
carbon source
succinate (C)
+0.0
-0.2
+0.1
-0.4
-0.7
carbon source
L-Leucine (C) 10 mM
-0.3
-0.2
-0.5
+0.1
-0.2
carbon source
Cytidine carbon 10 mM
-0.1
-0.3
+0.2
-0.2
-0.5
carbon source
a-Ketoglutaric (C) 10 mM
+0.1
-0.3
-0.6
-0.3
+0.1
carbon source
L-Isoleucine carbon 10 mM
-0.2
+0.1
+0.2
-0.4
-0.5
carbon source
L-Phenylalanine carbon 5 mM
+0.1
-0.0
-0.7
+0.3
-0.4
carbon source
Vanillic Acid (C) 2.5 mM
-0.1
-0.4
+0.4
-0.5
-0.1
carbon source
L-Lactate (C) 10 mM
-0.2
+0.7
-0.1
-0.2
-0.9
carbon source
D(+)-Glucuronic carbon 10 mM
+0.1
-0.3
+0.2
-0.4
-0.4
carbon source
L-Hydroxyproline carbon 10 mM
+0.2
+0.2
+0.1
-0.3
-0.9
carbon source
Guanosine (C)
-0.1
+0.2
-0.6
+0.2
-0.1
carbon source
L-Malic (C) 10 mM
-0.5
+0.3
-0.3
+0.0
+0.5
carbon source
Guanosine carbon 10 mM
+0.1
+0.1
+0.6
-0.2
-0.4
carbon source
caffeic (C)
-0.0
+0.3
-0.2
+0.5
-0.3
carbon source
caffeic (C)
+0.1
-0.3
+0.6
+0.2
-0.3
carbon source
caffeic (C) 2.5 mM
+0.3
+0.0
+0.4
-0.5
+0.2
carbon source
Betaine (C)
+0.1
+0.0
-0.0
+0.8
-0.4
carbon source
butyrate (C)
-0.1
-0.2
-0.2
+0.5
+0.5
carbon source
sn-glycero-3-phosphocholine (C)
-0.3
+0.3
+0.3
+0.3
+0.2
carbon source
Xanthosine (C)
+0.1
+0.1
+0.4
+0.5
-0.3
carbon source
Guanosine (C)
+0.2
-0.7
+0.4
+0.3
+0.8
carbon source
L-Valine (C) 10 mM
-0.1
+0.3
+0.4
+0.1
+0.4
carbon source
L-Lactate (C) 10 mM
+0.0
+0.4
+0.3
+0.3
+0.3
carbon source
methyl ferulate (C)
+0.4
+0.4
+0.1
+0.1
+0.3
in planta
Plant=Sorghum; PlantTreatment=None; Sample=root_top; GrowthSubstrate=calcine_clay; Collection=Direct
+0.4
-0.0
-0.5
+0.7
+1.0
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PFR28_02590
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