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Protein
Homologs
Fitness for 5 genes in
Pseudomonas sp. RS175
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFR28_02555 and PFR28_02556 are separated by 73 nucleotides
PFR28_02556 and PFR28_02557 are separated by 192 nucleotides
PFR28_02557 and PFR28_02558 are separated by 168 nucleotides
PFR28_02558 and PFR28_02559 are separated by 66 nucleotides
PFR28_02555: PFR28_02555 - hypothetical protein, at 3,031,411 to 3,032,118
_02555
PFR28_02556: PFR28_02556 - hypothetical protein, at 3,032,192 to 3,032,992
_02556
PFR28_02557: PFR28_02557 - Non-heme chloroperoxidase, at 3,033,185 to 3,034,138
_02557
PFR28_02558: PFR28_02558 - Sensor histidine kinase RcsC, at 3,034,307 to 3,036,496
_02558
PFR28_02559: PFR28_02559 - hypothetical protein, at 3,036,563 to 3,036,955
_02559
Group
Condition
PFR28
_02555
PFR28
_02556
PFR28
_02557
PFR28
_02558
PFR28
_02559
carbon source
4-Hydroxyphenylpropionic (C) 2.5 mM
-1.2
-0.1
-0.3
+0.3
-1.8
carbon source
Betaine (C)
-1.1
+0.2
-0.6
+0.1
-0.1
carbon source
Cytidine (C)
-1.0
-0.4
+0.1
+0.3
-0.6
carbon source
butyrate (C) 10 mM
-0.7
-0.2
-0.2
+0.1
-0.6
carbon source
Guanosine (C)
-0.7
-0.8
-0.3
+0.2
+0.3
carbon source
propionate (C) 20 mM
-0.6
-0.1
-0.0
-0.2
-0.5
carbon source
Shikimic Acid (C) 10 mM
-0.2
-0.4
+0.2
-0.1
-0.8
carbon source
Guanosine (C)
-0.3
-0.0
-0.3
+0.1
-0.9
carbon source
Glycocyamine 20 mM (C)
-0.4
+0.1
-0.2
-0.0
-0.7
mixed carbon source
mixed (C)s Trisodium citrate 10 mM and 3-Chloro-L-tyrosine 10 mM
-0.6
-0.3
-0.0
+0.1
-0.3
carbon source
Cytidine carbon 10 mM
-0.3
+0.1
-0.2
-0.1
-0.7
carbon source
Glycocyamine 10 mM (C)
-0.4
-0.2
-0.4
+0.1
-0.2
carbon source
Betaine (C) 2.5 mM
-0.5
-0.6
+0.0
-0.1
+0.3
carbon source
p-Coumaric (C) 2.5 mM
+0.2
-0.2
+0.1
+0.0
-1.0
carbon source
butyrate (C)
-0.3
-0.7
-0.2
-0.1
+0.7
carbon source
Citric Acid (C) 10 mM
-0.3
-0.1
-0.3
-0.2
+0.4
carbon source
Vanillic Acid (C) 2.5 mM
+0.6
-0.2
-0.0
-0.1
-0.7
carbon source
Methyl 3-(4-hydroxyphenyl)propionate (C) 2.5 mM
+0.7
-0.3
-0.1
+0.1
-0.8
carbon source
Choline (C) 10 mM
-0.3
-0.2
-0.3
-0.1
+0.5
carbon source
D-Ribose carbon 10 mM
-0.7
+0.3
+0.1
-0.1
+0.3
carbon source
caffeic (C)
-0.7
+0.1
-0.1
+0.1
+0.5
carbon source
4-Hydroxyphenylpropionic (C) 2.5 mM
+0.0
+0.6
+0.0
+0.3
-0.8
carbon source
pyruvate (C)
-0.1
-0.2
-0.2
-0.2
+0.9
in planta
Plant=Sorghum; PlantTreatment=None; Sample=root_top; GrowthSubstrate=calcine_clay; Collection=Direct
-0.5
+0.8
+0.1
+0.3
-0.4
carbon source
sn-glycero-3-phosphocholine (C)
+0.5
-0.4
-0.3
+0.1
+0.5
carbon source
octanoate (C)
-0.3
+0.2
-0.1
-0.1
+0.8
carbon source
Glycocyamine 10 mM (C)
-0.4
+0.1
-0.0
+0.1
+0.8
carbon source
4-Guanidinobutyric (C)
-0.1
+0.2
-0.1
-0.1
+0.8
carbon source
methyl ferulate (C)
-0.2
+0.3
+0.2
+0.1
+0.5
carbon source
Guanosine (C)
+0.3
-0.0
+0.0
-0.3
+1.0
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