Fitness for 5 genes in Pseudomonas sp. RS175

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500 ntPFR28_02474 and PFR28_02475 are separated by 129 nucleotidesPFR28_02475 and PFR28_02476 are separated by 248 nucleotidesPFR28_02476 and PFR28_02477 are separated by 83 nucleotidesPFR28_02477 and PFR28_02478 are separated by 462 nucleotides PFR28_02474: PFR28_02474 - IS110 family transposase ISPfl1, at 2,950,102 to 2,951,124 _02474 PFR28_02475: PFR28_02475 - 4-hydroxyphenylpyruvate dioxygenase, at 2,951,254 to 2,952,330 _02475 PFR28_02476: PFR28_02476 - putative amino-acid metabolite efflux pump, at 2,952,579 to 2,953,523 _02476 PFR28_02477: PFR28_02477 - HTH-type transcriptional regulator GltC, at 2,953,607 to 2,954,470 _02477 PFR28_02478: PFR28_02478 - hypothetical protein, at 2,954,933 to 2,955,301 _02478
Group Condition PFR28_02474 PFR28_02475 PFR28_02476 PFR28_02477 PFR28_02478
carbon source L-tyrosine (C) 10 mM N.D. -4.6 +0.1 -0.0 -1.0
carbon source L-tyrosine (C) 10 mM N.D. -4.2 +0.1 +0.2 -0.3
carbon source L-Phenylalanine 5 mM (C) N.D. -4.0 +0.3 +0.2 -0.4
carbon source L-Phenylalanine 5 mM (C) N.D. -4.1 +0.2 +0.2 -0.2
carbon source L-Phenylalanine 5 mM (C) N.D. -3.9 +0.0 +0.2 -0.2
carbon source 4-Hydroxyphenylpropionic (C) 2.5 mM N.D. -1.3 -0.1 -0.1 -2.3
carbon source L-Phenylalanine carbon 5 mM N.D. -2.1 +0.2 -0.1 -1.6
carbon source p-Coumaric (C) N.D. -0.2 -0.2 -0.2 -3.0
carbon source L-tyrosine (C) 10 mM N.D. -3.2 +0.2 -0.1 -0.2
carbon source 4-Hydroxyphenylpropionic (C) 2.5 mM N.D. -0.9 -0.2 -0.1 -2.1
carbon source 4-Hydroxybenzoic Acid (C) 2.5 mM N.D. -0.5 -0.1 +0.3 -2.9
carbon source 4-Guanidinobutyric (C) N.D. +0.2 -0.1 -0.3 -3.0
carbon source butyrate (C) 10 mM N.D. -0.6 +0.2 -0.0 -2.5
carbon source 4-Hydroxyphenylpropionic (C) 2.5 mM N.D. -1.1 -0.3 +0.4 -1.8
carbon source L-Phenylalanine carbon 5 mM N.D. -2.0 +0.3 -0.2 -0.6
carbon source Shikimic Acid carbon 10 mM N.D. -2.0 +0.1 +0.0 -0.5
carbon source L-Carnitine (C) 10 mM N.D. +0.1 +0.2 +0.3 -3.0
carbon source butyrate (C) N.D. -0.2 -0.0 -0.5 -1.6
carbon source Methyl 3-(4-hydroxyphenyl)propionate (C) 2.5 mM N.D. -0.1 +0.1 -0.5 -1.6
mixed carbon source mixed (C)s Trisodium citrate 10 mM and L-tyrosine 5 mM N.D. -1.8 +0.1 +0.1 -0.5
carbon source methyl ferulate (C) N.D. -0.6 -0.2 -0.2 -1.1
carbon source Shikimic Acid carbon 10 mM N.D. -1.6 +0.0 +0.1 -0.5
carbon source Guanosine (C) N.D. -0.4 +0.1 -0.0 -1.7
in planta Plant=Sorghum; PlantTreatment=None; Sample=root_top; GrowthSubstrate=calcine_clay; Collection=Direct N.D. +0.3 -0.2 +0.4 -2.4
carbon source L-Arginine (C) 10 mM N.D. -0.1 +0.1 -0.2 -1.6
carbon source L-Phenylalanine carbon 5 mM N.D. -2.1 +0.1 -0.2 +0.3
carbon source L-Lactate (C) 10 mM N.D. -0.3 +0.3 -0.1 -1.7
carbon source methyl-trans-p-coumarate (C) N.D. -0.8 +0.2 +0.3 -1.2
carbon source L-Lysine (C) 10 mM N.D. -0.1 +0.3 +0.1 -1.5
carbon source D-Fructose (C) 10 mM N.D. +0.1 +0.3 +0.1 -1.7
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