Fitness for 5 genes in Pseudomonas sp. RS175

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500 ntPFR28_02473 and PFR28_02474 are separated by 292 nucleotidesPFR28_02474 and PFR28_02475 are separated by 129 nucleotidesPFR28_02475 and PFR28_02476 are separated by 248 nucleotidesPFR28_02476 and PFR28_02477 are separated by 83 nucleotides PFR28_02473: PFR28_02473 - Protein RarD, at 2,948,925 to 2,949,809 _02473 PFR28_02474: PFR28_02474 - IS110 family transposase ISPfl1, at 2,950,102 to 2,951,124 _02474 PFR28_02475: PFR28_02475 - 4-hydroxyphenylpyruvate dioxygenase, at 2,951,254 to 2,952,330 _02475 PFR28_02476: PFR28_02476 - putative amino-acid metabolite efflux pump, at 2,952,579 to 2,953,523 _02476 PFR28_02477: PFR28_02477 - HTH-type transcriptional regulator GltC, at 2,953,607 to 2,954,470 _02477
Group Condition PFR28_02473 PFR28_02474 PFR28_02475 PFR28_02476 PFR28_02477
carbon source L-tyrosine (C) 10 mM +0.2 N.D. -4.6 +0.1 -0.0
carbon source L-tyrosine (C) 10 mM -0.1 N.D. -4.2 +0.1 +0.2
carbon source L-Phenylalanine 5 mM (C) -0.0 N.D. -4.1 +0.2 +0.2
carbon source L-Phenylalanine 5 mM (C) +0.1 N.D. -4.0 +0.3 +0.2
carbon source L-Phenylalanine 5 mM (C) +0.2 N.D. -3.9 +0.0 +0.2
carbon source L-tyrosine (C) 10 mM -0.2 N.D. -3.2 +0.2 -0.1
carbon source L-Phenylalanine carbon 5 mM -0.0 N.D. -2.1 +0.2 -0.1
carbon source L-Phenylalanine carbon 5 mM +0.2 N.D. -2.1 +0.1 -0.2
carbon source L-Phenylalanine carbon 5 mM +0.1 N.D. -2.0 +0.3 -0.2
carbon source Shikimic Acid carbon 10 mM +0.0 N.D. -2.0 +0.1 +0.0
mixed carbon source mixed (C)s Trisodium citrate 10 mM and L-tyrosine 5 mM +0.0 N.D. -1.8 +0.1 +0.1
carbon source Shikimic Acid carbon 10 mM -0.1 N.D. -1.6 +0.0 +0.1
carbon source Shikimic Acid carbon 10 mM +0.0 N.D. -1.5 +0.1 -0.1
carbon source 4-Hydroxyphenylpropionic (C) 2.5 mM -0.2 N.D. -0.9 -0.2 -0.1
mixed carbon source mixed (C)s Trisodium citrate 10 mM and L-tyrosine 5 mM +0.1 N.D. -1.3 +0.0 -0.1
carbon source 4-Hydroxyphenylpropionic (C) 2.5 mM +0.2 N.D. -1.3 -0.1 -0.1
mixed carbon source mixed (C)s Trisodium citrate 10 mM and 3-Chloro-L-tyrosine 10 mM +0.1 N.D. -1.1 -0.0 -0.0
carbon source 4-Hydroxyphenylpropionic (C) 2.5 mM -0.1 N.D. -1.1 -0.3 +0.4
mixed carbon source mixed (C)s Trisodium citrate 10 mM and 3-Chloro-L-tyrosine 10 mM +0.0 N.D. -1.1 +0.2 -0.1
carbon source Choline chloride (C) -0.8 N.D. -0.2 +0.2 -0.1
mixed carbon source mixed (C)s Trisodium citrate 10 mM and L-tyrosine 5 mM +0.1 N.D. -1.2 +0.1 +0.0
carbon source Guanosine (C) -0.3 N.D. -0.3 +0.3 -0.6
carbon source Vanillic Acid (C) 2.5 mM +0.2 N.D. -0.7 -0.0 -0.2
carbon source Choline chloride (C) -0.7 N.D. -0.3 +0.1 +0.1
carbon source 4-Hydroxybenzoic Acid (C) 2.5 mM -0.2 N.D. -0.5 -0.1 +0.3
carbon source Inosine carbon 10 mM -0.4 N.D. -0.2 -0.2 +0.5
carbon source methyl-trans-p-coumarate (C) -0.0 N.D. -0.8 +0.2 +0.3
carbon source Vanillic Acid (C) 2.5 mM +0.6 N.D. -0.4 -0.2 -0.1
in planta Plant=Sorghum; PlantTreatment=None; Sample=root_top; GrowthSubstrate=calcine_clay; Collection=Direct -0.6 N.D. +0.3 -0.2 +0.4
carbon source sn-glycero-3-phosphocholine (C) 10 mM +1.0 N.D. -0.1 +0.1 -0.0
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