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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas sp. RS175
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFR28_02381 and PFR28_02382 are separated by 18 nucleotides
PFR28_02382 and PFR28_02383 are separated by 51 nucleotides
PFR28_02383 and PFR28_02384 are separated by 224 nucleotides
PFR28_02384 and PFR28_02385 are separated by 30 nucleotides
PFR28_02381: PFR28_02381 - hypothetical protein, at 2,846,444 to 2,847,205
_02381
PFR28_02382: PFR28_02382 - hypothetical protein, at 2,847,224 to 2,848,555
_02382
PFR28_02383: PFR28_02383 - hypothetical protein, at 2,848,607 to 2,849,071
_02383
PFR28_02384: PFR28_02384 - hypothetical protein, at 2,849,296 to 2,849,862
_02384
PFR28_02385: PFR28_02385 - hypothetical protein, at 2,849,893 to 2,851,374
_02385
Group
Condition
PFR28
_02381
PFR28
_02382
PFR28
_02383
PFR28
_02384
PFR28
_02385
carbon source
Guanosine (C)
-0.5
-0.5
-0.3
-1.0
-0.0
carbon source
Vanillic Acid (C) 2.5 mM
-0.5
-0.4
-0.3
-0.6
-0.6
carbon source
Guanosine (C)
-0.9
-0.5
-0.1
-0.6
+0.1
carbon source
4-Hydroxyphenylpropionic (C) 2.5 mM
-0.9
+0.3
+0.2
-0.9
-0.6
carbon source
butyrate (C) 10 mM
+0.1
-0.3
-0.2
-0.9
-0.4
carbon source
4-Hydroxybenzoic Acid (C) 2.5 mM
-0.5
-0.4
-0.2
-0.1
-0.4
carbon source
Vanillic Acid (C) 2.5 mM
-0.0
-0.1
+0.2
-1.0
-0.5
carbon source
Glycocyamine 20 mM (C)
-0.2
-0.8
-0.2
+0.1
-0.3
carbon source
Vanillic Acid (C) 2.5 mM
-0.4
+0.1
-0.2
-0.3
-0.5
carbon source
Ferulic Acid (C) 2.5 mM
-0.2
-0.4
+0.1
-0.3
-0.4
carbon source
Cytidine carbon 10 mM
+0.1
-0.4
-0.3
-0.3
-0.3
carbon source
p-Coumaric (C) 2.5 mM
-0.3
-0.1
+0.1
-0.4
-0.5
carbon source
succinate (C)
-0.2
-0.5
+0.1
-0.5
+0.0
carbon source
4-Hydroxyphenylpropionic (C) 2.5 mM
-0.9
-0.5
+0.1
+0.6
-0.3
carbon source
butyrate (C)
-0.4
-0.3
+0.3
-0.5
-0.1
carbon source
L-Malic (C)
-0.4
-0.3
+0.1
-0.4
-0.1
carbon source
methyl ferulate (C)
-0.0
-0.5
-0.1
-0.6
+0.2
carbon source
4-Acetoxy-3-methoxycinnamic (C)
-0.4
-0.3
+0.3
-0.4
-0.1
carbon source
caffeic (C) 2.5 mM
-0.3
-0.1
+0.2
-0.3
-0.5
carbon source
Ferulic Acid (C) 2.5 mM
-0.0
-0.1
+0.2
-0.5
-0.5
carbon source
L-Lactate (C) 10 mM
+0.3
-0.9
-0.2
+0.3
-0.4
carbon source
Xanthosine (C)
-0.4
-0.1
+0.1
-0.5
+0.1
carbon source
p-Coumaric (C) 2.5 mM
-0.2
-0.1
+0.2
-0.3
-0.5
carbon source
L-Lactate (C)
-0.4
-0.6
+0.1
+0.2
-0.0
carbon source
methyl ferulate (C)
-0.2
-0.3
-0.1
-0.5
+0.4
carbon source
Inosine carbon 10 mM
+0.4
-0.4
+0.1
-0.3
-0.2
carbon source
4-Hydroxybenzoic Acid (C) 2.5 mM
-0.0
+0.1
+0.5
-0.3
-0.5
carbon source
L-Lysine (C) 10 mM
+0.7
+0.1
-0.5
-0.1
+0.2
carbon source
Azelaic carbon 10 mM
+0.5
-0.4
+0.1
+0.3
+0.1
carbon source
L-tyrosine (C) 10 mM
+0.4
-0.1
-0.1
+0.7
-0.1
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