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Protein
Homologs
Fitness for 5 genes in
Pseudomonas sp. RS175
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500 nt
PFR28_02330 and PFR28_02331 overlap by 14 nucleotides
PFR28_02331 and PFR28_02332 overlap by 4 nucleotides
PFR28_02332 and PFR28_02333 overlap by 11 nucleotides
PFR28_02333 and PFR28_02334 are separated by 71 nucleotides
PFR28_02330: PFR28_02330 - 3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase, at 2,783,645 to 2,784,454
_02330
PFR28_02331: PFR28_02331 - hypothetical protein, at 2,784,441 to 2,785,115
_02331
PFR28_02332: PFR28_02332 - 2-succinylbenzoate--CoA ligase, at 2,785,112 to 2,786,593
_02332
PFR28_02333: PFR28_02333 - hypothetical protein, at 2,786,583 to 2,787,260
_02333
PFR28_02334: PFR28_02334 - hypothetical protein, at 2,787,332 to 2,788,549
_02334
Group
Condition
PFR28
_02330
PFR28
_02331
PFR28
_02332
PFR28
_02333
PFR28
_02334
carbon source
L-Carnitine (C) 10 mM
-1.8
-0.3
-0.5
-0.6
-0.1
carbon source
Methyl 3-(4-hydroxyphenyl)propionate (C) 2.5 mM
-0.9
-0.4
-1.0
-0.5
+0.0
carbon source
L-Carnitine (C) 10 mM
-1.1
-0.3
-0.2
-0.6
-0.0
carbon source
Shikimic Acid carbon 10 mM
-1.0
-0.5
-0.4
-0.3
-0.0
carbon source
Shikimic Acid carbon 10 mM
-1.1
-0.5
-0.4
-0.0
-0.1
carbon source
Shikimic Acid carbon 10 mM
-0.9
-0.5
-0.3
-0.2
-0.1
carbon source
4-Hydroxyphenylpropionic (C) 2.5 mM
-0.8
+0.0
-0.1
-0.9
+0.1
carbon source
caffeic (C)
-0.6
-0.0
-0.7
-0.2
-0.0
carbon source
Cytidine (C)
-0.8
-0.1
-0.3
+0.0
-0.2
carbon source
D(+)-Glucuronic carbon 10 mM
-0.6
-0.3
+0.2
-0.3
-0.2
carbon source
butyrate (C) 10 mM
-1.2
+0.1
+0.2
-0.2
+0.1
carbon source
4-Hydroxyphenylpropionic (C) 2.5 mM
-0.4
-0.0
-0.8
+0.2
-0.0
carbon source
D(+)-Glucuronic carbon 10 mM
-1.0
-0.2
-0.0
+0.2
-0.0
carbon source
Guanosine (C)
+0.0
-0.6
-0.6
+0.4
-0.1
carbon source
Betaine (C) 2.5 mM
-0.5
+0.1
+0.1
-0.5
-0.0
carbon source
4-Hydroxyphenylpropionic (C) 2.5 mM
-0.4
+0.3
+0.2
-0.8
-0.1
carbon source
butyrate (C) 10 mM
-0.7
+0.1
-0.1
-0.2
+0.2
carbon source
L-Leucine (C) 10 mM
+0.1
-0.2
-0.7
+0.3
-0.1
carbon source
4-Acetoxy-3-methoxycinnamic (C)
+0.3
+0.2
-0.0
-0.9
-0.0
carbon source
Glycocyamine 20 mM (C)
+0.5
-0.6
-0.2
+0.1
-0.2
carbon source
Choline (C) 10 mM
-0.8
-0.1
+0.2
+0.3
-0.0
carbon source
4-Hydroxybenzoic Acid (C) 2.5 mM
-0.6
+0.2
-0.3
+0.3
-0.0
in planta
Plant=Sorghum; PlantTreatment=None; Sample=root_top; GrowthSubstrate=calcine_clay; Collection=Direct
-0.5
+0.2
-0.4
+0.6
-0.3
carbon source
L-Lysine (C) 10 mM
-0.5
+0.0
+0.5
-0.3
-0.0
carbon source
Guanosine (C)
-0.7
-0.0
+0.6
-0.2
+0.1
carbon source
L-Hydroxyproline (C) 10 mM
+0.4
-0.3
+0.3
-0.3
+0.0
carbon source
NAG (C) 10 mM
+0.5
-0.1
+0.3
-0.3
+0.0
carbon source
Inosine carbon 10 mM
-0.1
-0.1
-0.2
+0.7
+0.3
carbon source
methyl ferulate (C)
+0.5
+0.3
-0.3
+0.1
+0.1
carbon source
Betaine (C)
+0.7
+0.4
+0.0
-0.3
+0.0
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PFR28_02332
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PFR28_02334
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