Fitness for 5 genes in Pseudomonas sp. RS175

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 385 experiments or choose conditions or try the comparative fitness browser

500 ntPFR28_02329 and PFR28_02330 overlap by 4 nucleotidesPFR28_02330 and PFR28_02331 overlap by 14 nucleotidesPFR28_02331 and PFR28_02332 overlap by 4 nucleotidesPFR28_02332 and PFR28_02333 overlap by 11 nucleotides PFR28_02329: PFR28_02329 - hypothetical protein, at 2,783,004 to 2,783,648 _02329 PFR28_02330: PFR28_02330 - 3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase, at 2,783,645 to 2,784,454 _02330 PFR28_02331: PFR28_02331 - hypothetical protein, at 2,784,441 to 2,785,115 _02331 PFR28_02332: PFR28_02332 - 2-succinylbenzoate--CoA ligase, at 2,785,112 to 2,786,593 _02332 PFR28_02333: PFR28_02333 - hypothetical protein, at 2,786,583 to 2,787,260 _02333
Group Condition PFR28_02329 PFR28_02330 PFR28_02331 PFR28_02332 PFR28_02333
carbon source L-Carnitine (C) 10 mM +0.1 -1.8 -0.3 -0.5 -0.6
carbon source Methyl 3-(4-hydroxyphenyl)propionate (C) 2.5 mM -0.0 -0.9 -0.4 -1.0 -0.5
carbon source Shikimic Acid carbon 10 mM -0.3 -1.1 -0.5 -0.4 -0.0
carbon source L-Carnitine (C) 10 mM -0.0 -1.1 -0.3 -0.2 -0.6
carbon source Shikimic Acid carbon 10 mM -0.4 -0.9 -0.5 -0.3 -0.2
carbon source caffeic (C) -0.6 -0.6 -0.0 -0.7 -0.2
carbon source Shikimic Acid carbon 10 mM +0.2 -1.0 -0.5 -0.4 -0.3
carbon source 4-Hydroxyphenylpropionic (C) 2.5 mM -0.1 -0.8 +0.0 -0.1 -0.9
carbon source D(+)-Glucuronic carbon 10 mM -0.2 -0.6 -0.3 +0.2 -0.3
carbon source acetate carbon 10 mM -0.4 -0.4 -0.1 -0.5 +0.1
carbon source D(+)-Glucuronic carbon 10 mM -0.1 -1.0 -0.2 -0.0 +0.2
carbon source 4-Hydroxyphenylpropionic (C) 2.5 mM +0.1 -0.4 -0.0 -0.8 +0.2
carbon source butyrate (C) 10 mM +0.2 -1.2 +0.1 +0.2 -0.2
carbon source Guanosine (C) +0.1 +0.0 -0.6 -0.6 +0.4
carbon source 4-Hydroxyphenylpropionic (C) 2.5 mM -0.0 -0.4 +0.3 +0.2 -0.8
carbon source Choline (C) 10 mM -0.3 -0.8 -0.1 +0.2 +0.3
carbon source Betaine (C) 2.5 mM +0.2 -0.5 +0.1 +0.1 -0.5
carbon source methyl ferulate (C) -0.9 +0.0 +0.3 +0.1 -0.1
in planta Plant=Sorghum; PlantTreatment=None; Sample=root_top; GrowthSubstrate=calcine_clay; Collection=Direct -0.5 -0.5 +0.2 -0.4 +0.6
carbon source 4-Hydroxybenzoic Acid (C) 2.5 mM -0.2 -0.6 +0.2 -0.3 +0.3
carbon source butyrate (C) 10 mM +0.5 -0.7 +0.1 -0.1 -0.2
carbon source 4-Acetoxy-3-methoxycinnamic (C) +0.1 +0.3 +0.2 -0.0 -0.9
carbon source Glycocyamine 20 mM (C) -0.0 +0.5 -0.6 -0.2 +0.1
carbon source L-Leucine (C) 10 mM +0.3 +0.1 -0.2 -0.7 +0.3
carbon source L-Lysine (C) 10 mM +0.1 -0.5 +0.0 +0.5 -0.3
carbon source Xanthosine (C) -0.4 +0.4 +0.3 -0.3 +0.0
carbon source Guanosine (C) +0.8 -0.7 -0.0 +0.6 -0.2
carbon source NAG (C) 10 mM +0.4 +0.5 -0.1 +0.3 -0.3
carbon source Betaine (C) +0.0 +0.7 +0.4 +0.0 -0.3
carbon source Guanosine (C) +0.7 +0.4 +0.1 +0.1 +0.3
remove
PFR28_02329
plot
remove
PFR28_02330
plot
remove
PFR28_02331
remove
PFR28_02332
plot
remove
PFR28_02333
plot