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Protein
Homologs
Fitness for 5 genes in
Pseudomonas sp. RS175
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500 nt
PFR28_02174 and PFR28_02175 are separated by 215 nucleotides
PFR28_02175 and PFR28_02176 are separated by 3 nucleotides
PFR28_02176 and PFR28_02177 are separated by 420 nucleotides
PFR28_02177 and PFR28_02178 are separated by 26 nucleotides
PFR28_02174: PFR28_02174 - RNA pyrophosphohydrolase, at 2,499,383 to 2,499,745
_02174
PFR28_02175: PFR28_02175 - Inner membrane protein YiaW, at 2,499,961 to 2,500,332
_02175
PFR28_02176: PFR28_02176 - Inner membrane protein YiaV, at 2,500,336 to 2,501,295
_02176
PFR28_02177: PFR28_02177 - Arginine/ornithine antiporter, at 2,501,716 to 2,503,143
_02177
PFR28_02178: PFR28_02178 - Arginine deiminase, at 2,503,170 to 2,504,426
_02178
Group
Condition
PFR28
_02174
PFR28
_02175
PFR28
_02176
PFR28
_02177
PFR28
_02178
carbon source
Guanosine (C)
-3.8
+0.3
-0.4
N.D.
N.D.
carbon source
L-Lactate (C) 10 mM
-2.4
-0.1
+0.4
N.D.
N.D.
carbon source
p-Coumaric (C) 2.5 mM
-0.9
-0.1
-0.8
N.D.
N.D.
carbon source
L-Lactate (C) 10 mM
-1.8
+0.2
-0.1
N.D.
N.D.
carbon source
Methyl 3-(4-hydroxyphenyl)propionate (C) 2.5 mM
-0.8
-0.2
-0.6
N.D.
N.D.
carbon source
4-Hydroxybenzoic Acid (C) 2.5 mM
-0.6
-0.3
-0.7
N.D.
N.D.
carbon source
Ferulic Acid (C) 2.5 mM
-0.5
-0.6
-0.5
N.D.
N.D.
carbon source
4-Hydroxybenzoic Acid (C) 2.5 mM
-0.6
-0.4
-0.5
N.D.
N.D.
carbon source
octanoate (C) 10 mM
-1.0
-0.2
-0.2
N.D.
N.D.
carbon source
4-Aminobutyric carbon 10 mM
-1.0
-0.1
-0.2
N.D.
N.D.
carbon source
L-Malic (C) 10 mM
-0.6
-0.6
-0.2
N.D.
N.D.
carbon source
caffeic (C) 2.5 mM
-0.8
-0.2
-0.4
N.D.
N.D.
carbon source
methyl ferulate (C)
-0.6
-0.6
-0.1
N.D.
N.D.
carbon source
p-Coumaric (C) 2.5 mM
-0.5
-0.1
-0.7
N.D.
N.D.
carbon source
4-Hydroxyphenylpropionic (C) 2.5 mM
-0.9
+0.5
-0.8
N.D.
N.D.
carbon source
Betaine (C)
-1.7
-0.0
+0.5
N.D.
N.D.
carbon source
D-(+)-Galactosamine (C) 10 mM
-0.6
+0.2
-0.5
N.D.
N.D.
carbon source
Vanillic Acid (C) 2.5 mM
-0.6
+0.3
-0.5
N.D.
N.D.
carbon source
Xanthosine (C)
-1.3
+0.3
+0.2
N.D.
N.D.
carbon source
octanoate (C)
-0.8
+0.5
-0.3
N.D.
N.D.
carbon source
Inosine carbon 10 mM
-1.0
+0.4
-0.0
N.D.
N.D.
carbon source
L-Lysine (C) 10 mM
-0.9
+0.5
-0.0
N.D.
N.D.
carbon source
4-Hydroxyphenylpropionic (C) 2.5 mM
+0.6
-0.0
-0.7
N.D.
N.D.
carbon source
methyl-trans-p-coumarate (C)
+0.5
+0.1
-0.8
N.D.
N.D.
carbon source
butyrate (C)
-0.8
+0.9
+0.1
N.D.
N.D.
carbon source
Guanosine (C)
-1.2
+0.9
+0.7
N.D.
N.D.
carbon source
Quinic Acid (C)
+1.0
-0.2
-0.4
N.D.
N.D.
carbon source
Vanillic Acid (C) 2.5 mM
+0.7
+0.2
-0.6
N.D.
N.D.
carbon source
L-pyroglutamic (C) 10 mM
+0.6
+0.4
-0.3
N.D.
N.D.
carbon source
p-Coumaric (C)
+0.7
+0.7
-0.3
N.D.
N.D.
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