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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas sp. RS175
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFR28_02165 and PFR28_02166 are separated by 248 nucleotides
PFR28_02166 and PFR28_02167 are separated by 164 nucleotides
PFR28_02167 and PFR28_02168 are separated by 102 nucleotides
PFR28_02168 and PFR28_02169 are separated by 235 nucleotides
PFR28_02165: PFR28_02165 - hypothetical protein, at 2,492,723 to 2,493,589
_02165
PFR28_02166: PFR28_02166 - Adaptive-response sensory-kinase SasA, at 2,493,838 to 2,495,634
_02166
PFR28_02167: PFR28_02167 - hypothetical protein, at 2,495,799 to 2,495,990
_02167
PFR28_02168: PFR28_02168 - hypothetical protein, at 2,496,093 to 2,496,992
_02168
PFR28_02169: PFR28_02169 - hypothetical protein, at 2,497,228 to 2,497,482
_02169
Group
Condition
PFR28
_02165
PFR28
_02166
PFR28
_02167
PFR28
_02168
PFR28
_02169
carbon source
butyrate (C) 10 mM
-0.1
-0.1
-6.8
+0.3
+0.3
carbon source
Guanosine (C)
+0.6
+0.2
-3.5
+0.2
-0.5
carbon source
Inosine carbon 10 mM
-0.1
+0.1
-2.2
-0.0
+0.3
carbon source
butyrate (C)
+0.0
+0.2
-1.5
-0.5
-0.0
carbon source
D-Ribose (C) 10 mM
-0.2
-0.0
-1.2
-0.0
-0.2
carbon source
D-Glucuronic (C) 10 mM
-0.1
-0.2
-0.9
-0.2
-0.1
carbon source
Vanillic Acid (C) 2.5 mM
+0.1
+0.1
-1.6
+0.0
-0.2
carbon source
Xanthosine (C) 10 mM
-0.2
-0.0
-1.1
+0.0
-0.2
carbon source
propionate (C) 20 mM
-0.2
+0.1
-1.1
-0.1
-0.1
carbon source
Betaine (C) 2.5 mM
-0.3
-0.1
-0.9
+0.3
-0.1
carbon source
Shikimic Acid (C) 10 mM
-0.4
-0.0
-0.9
-0.0
+0.3
carbon source
Cytidine carbon 10 mM
-0.4
+0.3
-0.1
-0.2
-0.5
carbon source
Shikimic Acid (C) 10 mM
+0.2
-0.1
-0.8
-0.2
+0.2
carbon source
4-Aminobutyric (C) 10 mM
+0.3
+0.1
-1.1
-0.1
+0.3
carbon source
D-Ribose (C) 10 mM
+0.3
+0.2
-0.7
-0.2
-0.1
carbon source
L-Phenylalanine 5 mM (C)
-0.3
+0.2
-0.5
-0.2
+0.3
carbon source
4-Hydroxybenzoic Acid (C) 2.5 mM
-0.3
-0.4
+0.3
+0.4
-0.2
carbon source
butyrate (C) 10 mM
+0.3
+0.2
-0.5
-0.4
+0.3
carbon source
L-Valine (C) 10 mM
+0.3
+0.2
-0.5
-0.2
+0.2
carbon source
methyl-trans-p-coumarate (C)
-0.4
+0.2
+0.8
-0.3
-0.1
carbon source
D-(+)-Galactosamine (C) 10 mM
-0.0
+0.8
-1.0
-0.0
+0.4
carbon source
4-Acetoxy-3-methoxycinnamic (C)
-0.6
+0.5
+0.5
-0.3
+0.2
carbon source
Ferulic Acid (C) 2.5 mM
-0.3
-0.2
+0.7
+0.2
+0.1
carbon source
Ferulic Acid (C) 2.5 mM
-0.3
-0.2
+0.8
+0.1
+0.1
carbon source
L-Carnitine (C)
-0.4
+0.2
+0.6
+0.1
+0.1
carbon source
Inosine (C)
-0.4
+0.2
+0.9
+0.1
-0.1
carbon source
D-(+)-Galactosamine (C) 10 mM
-0.4
+0.6
+0.5
+0.1
-0.1
carbon source
L-Lactate (C) 10 mM
+0.1
+0.0
+1.1
+0.2
-0.0
carbon source
Azelaic carbon 10 mM
-0.1
+0.0
+1.0
+0.3
+0.3
carbon source
4-Hydroxyphenylpropionic (C) 2.5 mM
-0.1
-0.0
+1.7
+0.3
+0.1
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PFR28_02167
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