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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas sp. RS175
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFR28_02136 and PFR28_02137 overlap by 4 nucleotides
PFR28_02137 and PFR28_02138 overlap by 8 nucleotides
PFR28_02138 and PFR28_02139 are separated by 10 nucleotides
PFR28_02139 and PFR28_02140 overlap by 1 nucleotides
PFR28_02136: PFR28_02136 - hypothetical protein, at 2,457,065 to 2,457,214
_02136
PFR28_02137: PFR28_02137 - Acetylornithine deacetylase, at 2,457,211 to 2,458,398
_02137
PFR28_02138: PFR28_02138 - hypothetical protein, at 2,458,391 to 2,459,065
_02138
PFR28_02139: PFR28_02139 - hypothetical protein, at 2,459,076 to 2,459,486
_02139
PFR28_02140: PFR28_02140 - hypothetical protein, at 2,459,486 to 2,460,814
_02140
Group
Condition
PFR28
_02136
PFR28
_02137
PFR28
_02138
PFR28
_02139
PFR28
_02140
carbon source
Cytidine (C)
-1.8
-0.2
-0.1
-0.4
-0.1
carbon source
butyrate (C)
-0.5
-0.2
-1.2
-0.3
-0.1
carbon source
Inosine (C)
-0.5
-0.2
-0.9
-0.3
+0.1
carbon source
D,L-Malic Acid (C) 10 mM
-0.9
+0.1
-0.7
-0.4
-0.0
carbon source
pyruvate (C)
-0.4
-0.3
-0.9
-0.3
+0.1
carbon source
5-Aminovaleric carbon 10 mM
-1.1
+0.0
+0.0
-0.6
-0.1
carbon source
butyrate (C) 10 mM
-1.1
+0.1
+0.0
-0.8
+0.2
carbon source
Choline (C) 10 mM
-0.9
-0.1
-0.2
+0.1
-0.4
carbon source
Azelaic carbon 10 mM
-1.0
-0.3
-0.2
-0.3
+0.3
carbon source
L-Lactate (C) 10 mM
-0.3
-0.4
-0.7
-0.0
+0.1
carbon source
a-Ketoglutaric carbon 10 mM
-0.7
+0.2
-0.5
-0.2
-0.1
carbon source
4-Hydroxyphenylpropionic (C) 2.5 mM
-0.0
+0.3
-0.7
-0.5
-0.2
carbon source
L-Lactate (C) 10 mM
-0.2
+0.2
-0.6
-0.5
+0.1
carbon source
Guanosine (C)
-0.9
+0.3
-0.1
-0.3
+0.1
carbon source
Guanosine (C)
+0.3
+0.1
-0.6
-0.8
+0.1
carbon source
L-tyrosine (C) 10 mM
+0.3
+0.2
-0.6
-0.2
-0.4
carbon source
Glycocyamine 20 mM (C)
-1.4
-0.1
+0.8
+0.1
+0.0
stress
D-Glucose (C); with Chloride 400 mM
+0.4
-0.2
-0.6
-0.3
+0.1
carbon source
p-Coumaric (C) 2.5 mM
+0.9
+0.0
-0.8
-0.3
-0.3
carbon source
Vanillic Acid (C) 2.5 mM
+0.8
-0.1
-0.7
-0.2
-0.2
carbon source
Vanillic Acid (C) 2.5 mM
+0.3
+0.3
-0.5
-0.2
-0.2
in planta
Plant=Sorghum; PlantTreatment=None; Sample=root_top; GrowthSubstrate=calcine_clay; Collection=Direct
-0.6
+0.5
-0.0
+0.2
-0.2
carbon source
4-Hydroxyphenylpropionic (C) 2.5 mM
+0.6
+0.8
-1.1
-0.1
-0.2
carbon source
caffeic (C)
+0.4
+0.2
-0.5
-0.3
+0.2
carbon source
Methyl 3-(4-hydroxyphenyl)propionate (C) 2.5 mM
+1.0
-0.2
-0.4
-0.1
-0.2
carbon source
L-Phenylalanine carbon 5 mM
+0.6
+0.2
-0.6
-0.1
+0.1
carbon source
4-Hydroxybenzoic Acid (C) 2.5 mM
+1.1
+0.1
-0.4
-0.2
-0.2
carbon source
Guanosine (C)
+1.1
+0.3
+0.3
-0.2
-0.2
carbon source
L-Valine (C) 10 mM
+0.9
-0.1
+0.3
+0.3
+0.1
carbon source
Betaine (C)
+0.6
+0.5
+0.7
-0.1
+0.1
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PFR28_02138
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PFR28_02140
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