Fitness for 5 genes in Pseudomonas sp. RS175

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500 ntPFR28_02124 and PFR28_02125 are separated by 402 nucleotidesPFR28_02125 and PFR28_02126 are separated by 134 nucleotidesPFR28_02126 and PFR28_02127 are separated by 193 nucleotidesPFR28_02127 and PFR28_02128 are separated by 61 nucleotides PFR28_02124: PFR28_02124 - Metallopeptidase AprA, at 2,441,830 to 2,443,287 _02124 PFR28_02125: PFR28_02125 - Nodulation protein D 2, at 2,443,690 to 2,444,604 _02125 PFR28_02126: PFR28_02126 - Riboflavin transporter RibZ, at 2,444,739 to 2,446,202 _02126 PFR28_02127: PFR28_02127 - hypothetical protein, at 2,446,396 to 2,446,674 _02127 PFR28_02128: PFR28_02128 - ATP-dependent DNA helicase Rep, at 2,446,736 to 2,449,204 _02128
Group Condition PFR28_02124 PFR28_02125 PFR28_02126 PFR28_02127 PFR28_02128
carbon source butyrate (C) 10 mM +0.1 -0.0 -1.4 -4.6 -0.0
carbon source D-Ribose (C) 10 mM +0.1 -0.8 -0.1 -4.6 +0.1
carbon source L-Hydroxyproline (C) 10 mM -0.0 -0.2 -0.1 -4.7 -0.1
carbon source 4-Hydroxyphenylpropionic (C) 2.5 mM -0.2 -1.1 +0.3 -4.0 -0.1
carbon source D-(+)-Galactosamine (C) 10 mM -0.1 -0.4 +0.1 -4.5 +0.1
carbon source L-Lactate (C) 10 mM +0.0 -1.5 -0.6 -2.1 -0.1
carbon source butyrate (C) +0.1 -0.2 -0.2 -3.5 +0.1
carbon source L-Carnitine (C) 10 mM -0.1 -0.2 -0.3 -2.9 +0.0
carbon source L-Lysine (C) 10 mM -0.2 -0.3 -0.4 -2.2 -0.0
in planta Plant=Sorghum; PlantTreatment=None; Sample=root_top; GrowthSubstrate=calcine_clay; Collection=Direct +0.0 +0.6 +0.5 -4.2 -0.1
carbon source 4-Hydroxybenzoic Acid (C) 2.5 mM -0.2 -0.4 -0.6 -1.7 -0.1
carbon source Shikimic Acid (C) 10 mM -0.2 -0.2 -0.0 -2.7 +0.0
carbon source caffeic (C) 2.5 mM -0.1 -0.5 -0.1 -2.2 -0.1
carbon source Xanthosine (C) 10 mM -0.1 -0.9 -0.1 -1.8 -0.1
carbon source Glycocyamine 10 mM (C) -0.1 -0.7 -0.0 -2.2 +0.0
carbon source 2-Keto-D-gluconic hemicalcium salt (C) 10 mM -0.0 -0.0 +0.0 -3.1 +0.2
carbon source Guanosine (C) +0.1 +0.3 -0.2 -3.2 +0.1
carbon source methyl-trans-p-coumarate (C) +0.2 -0.4 -0.4 -1.9 -0.0
carbon source caffeic (C) +0.1 +0.1 -0.5 -2.4 +0.0
carbon source L-Phenylalanine carbon 5 mM +0.1 -0.5 +0.1 -2.3 +0.1
carbon source D-Xylose carbon 10 mM -0.0 -0.1 -0.0 -2.5 +0.1
carbon source Uridine (C) 10 mM +0.1 -1.0 -0.0 -1.6 +0.1
carbon source Xanthosine (C) +0.2 -0.0 -0.1 -2.2 +0.1
carbon source Glycerol (C) 20 mM -0.0 +0.2 +0.2 -2.2 -0.0
carbon source Inosine (C) +0.0 +0.3 -0.4 -1.9 +0.1
carbon source Glycocyamine 20 mM (C) +0.0 +0.3 +0.3 -2.1 -0.1
carbon source Glycocyamine 10 mM (C) -0.0 -1.9 +0.0 +1.1 -0.1
carbon source p-Coumaric (C) -0.0 +0.2 -1.0 +1.7 -0.0
carbon source Cytidine (C) -0.1 -0.1 -0.3 +2.1 -0.0
stress D-Glucose (C); with Chloride 400 mM +0.1 +0.3 -0.4 +2.1 +0.1
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