Fitness for 5 genes in Pseudomonas sp. RS175

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 385 experiments or choose conditions or try the comparative fitness browser

500 ntPFR28_02001 and PFR28_02002 are separated by 136 nucleotidesPFR28_02002 and PFR28_02003 are separated by 794 nucleotidesPFR28_02003 and PFR28_02004 are separated by 184 nucleotidesPFR28_02004 and PFR28_02005 are separated by 352 nucleotides PFR28_02001: PFR28_02001 - HTH-type transcriptional regulator DmlR, at 2,273,553 to 2,274,452 _02001 PFR28_02002: PFR28_02002 - hypothetical protein, at 2,274,589 to 2,275,473 _02002 PFR28_02003: PFR28_02003 - HTH-type transcriptional activator RhaR, at 2,276,268 to 2,277,137 _02003 PFR28_02004: PFR28_02004 - hypothetical protein, at 2,277,322 to 2,277,969 _02004 PFR28_02005: PFR28_02005 - hypothetical protein, at 2,278,322 to 2,278,993 _02005
Group Condition PFR28_02001 PFR28_02002 PFR28_02003 PFR28_02004 PFR28_02005
carbon source Betaine (C) -1.7 +0.0 -0.1 -0.0 -0.1
carbon source 4-Hydroxyphenylpropionic (C) 2.5 mM -0.1 -0.2 +0.3 -0.5 -0.3
carbon source L-Hydroxyproline (C) 10 mM -0.4 -0.1 +0.3 -0.3 -0.2
carbon source methyl ferulate (C) -0.7 +0.4 +0.2 -0.2 -0.2
carbon source methyl ferulate (C) -0.5 +0.2 -0.3 +0.2 +0.2
carbon source 4-Hydroxyphenylpropionic (C) 2.5 mM +0.3 +0.2 -0.6 -0.2 +0.1
in planta Plant=Sorghum; PlantTreatment=None; Sample=root_top; GrowthSubstrate=calcine_clay; Collection=Direct +0.7 -0.0 -0.0 -0.4 -0.3
carbon source butyrate (C) 10 mM +0.1 -0.3 +1.0 +0.2 -0.9
carbon source trans-aconitic (C) -0.7 +0.0 +0.3 +0.4 +0.2
carbon source 4-Guanidinobutyric (C) +0.4 +0.3 -0.0 -0.6 +0.4
carbon source Vanillic Acid (C) 2.5 mM +0.7 -0.2 +0.5 -0.1 -0.3
carbon source butyrate (C) -0.2 -0.3 +0.0 +0.7 +0.4
carbon source sn-glycero-3-phosphocholine (C) -0.5 +0.4 +0.2 +0.4 +0.2
carbon source pyruvate (C) -0.4 +0.3 +0.1 +0.5 +0.2
carbon source butyrate (C) -0.5 +0.4 +0.2 +0.4 +0.2
carbon source octanoate (C) -0.1 +0.3 +0.4 -0.3 +0.4
carbon source butyrate (C) -0.6 +0.7 +0.0 +0.4 +0.3
carbon source 4-Hydroxybenzoic Acid (C) 2.5 mM +0.9 -0.2 -0.1 +0.2 +0.1
carbon source p-Coumaric (C) -0.4 +0.2 +0.3 +0.6 +0.3
carbon source Cytidine (C) -0.2 +0.3 +0.1 +0.5 +0.3
carbon source caffeic (C) -0.0 +0.4 +0.5 +0.4 +0.0
stress D-Glucose (C); with Chloride 400 mM -0.1 +0.2 +0.5 +0.6 +0.2
carbon source succinate (C) +0.1 +0.1 +0.3 +0.6 +0.3
carbon source Vanillic Acid (C) 2.5 mM +0.4 +0.1 +0.2 +0.3 +0.4
carbon source Uridine (C) 10 mM +0.4 +0.2 +0.3 +0.4 +0.2
carbon source D,L-Malic Acid (C) +0.2 +0.0 +0.3 +0.6 +0.4
carbon source Quinic Acid (C) +0.2 +0.4 +0.2 +0.5 +0.1
carbon source L-Carnitine (C) +0.2 +0.5 +0.1 +0.4 +0.3
carbon source Cytidine (C) +0.5 -0.3 +0.5 +0.7 +0.4
carbon source Guanosine (C) +0.2 +0.4 +0.9 +0.1 +0.4
remove
PFR28_02001
plot		 remove
PFR28_02002
plot		 remove
PFR28_02003		 remove
PFR28_02004
plot		 remove
PFR28_02005
plot