Fitness for 5 genes in Pseudomonas sp. RS175

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500 ntPFR28_01992 and PFR28_01993 overlap by 32 nucleotidesPFR28_01993 and PFR28_01994 are separated by 3 nucleotidesPFR28_01994 and PFR28_01995 are separated by 432 nucleotidesPFR28_01995 and PFR28_01996 are separated by 61 nucleotides PFR28_01992: PFR28_01992 - Type I secretion system ATP-binding protein PrsD, at 2,259,557 to 2,261,341 _01992 PFR28_01993: PFR28_01993 - Type I secretion system membrane fusion protein PrsE, at 2,261,310 to 2,262,635 _01993 PFR28_01994: PFR28_01994 - Outer membrane protein TolC, at 2,262,639 to 2,264,024 _01994 PFR28_01995: PFR28_01995 - Transcriptional regulatory protein LiaR, at 2,264,457 to 2,265,176 _01995 PFR28_01996: PFR28_01996 - hypothetical protein, at 2,265,238 to 2,269,398 _01996
Group Condition PFR28_01992 PFR28_01993 PFR28_01994 PFR28_01995 PFR28_01996
carbon source Inosine carbon 10 mM -0.1 -1.1 -0.1 -0.0 -0.0
carbon source Guanosine (C) -0.8 -0.8 +0.2 +0.2 -0.0
carbon source Vanillic Acid (C) 2.5 mM +0.3 -0.7 -0.2 -0.5 -0.1
carbon source 4-Hydroxyphenylpropionic (C) 2.5 mM +0.1 +0.2 -0.2 -0.7 -0.4
carbon source 4-Hydroxyphenylpropionic (C) 2.5 mM -0.2 +0.1 -0.2 -0.3 -0.4
carbon source acetate carbon 10 mM -0.3 -0.4 -0.1 +0.1 -0.2
carbon source Betaine (C) 2.5 mM +0.2 -0.4 -0.1 -0.5 -0.0
carbon source D-Glucuronic (C) 10 mM +0.2 -0.6 -0.2 -0.1 +0.0
carbon source butyrate (C) 10 mM -0.5 -0.4 -0.3 +0.2 +0.3
carbon source Azelaic carbon 10 mM +0.2 -0.7 -0.2 -0.1 +0.2
carbon source Cytidine carbon 10 mM +0.0 -0.7 +0.2 +0.2 -0.1
carbon source Glycocyamine 20 mM (C) -0.1 -0.6 +0.1 +0.4 -0.1
in planta Plant=Sorghum; PlantTreatment=None; Sample=root_top; GrowthSubstrate=calcine_clay; Collection=Direct -0.1 +0.1 -0.3 +0.4 -0.2
carbon source Guanosine (C) -0.8 +0.5 +0.0 +0.2 +0.0
carbon source trans-aconitic (C) +0.1 +0.5 -0.2 -0.3 +0.2
carbon source Glycerol (C) 20 mM -0.4 +0.4 -0.1 +0.3 +0.1
carbon source Betaine (C) +0.1 +1.0 -0.3 -0.6 +0.2
carbon source succinate (C) -0.2 +0.6 +0.1 +0.2 -0.2
stress D-Glucose (C); with Chloride 400 mM -0.2 +0.4 +0.2 +0.2 -0.1
carbon source p-Coumaric (C) +0.1 +0.5 -0.3 +0.2 +0.0
carbon source 4-Hydroxyphenylpropionic (C) 2.5 mM +0.4 +0.2 +0.4 -0.2 -0.1
carbon source octanoate (C) +0.1 +0.8 -0.2 +0.1 -0.1
carbon source pyruvate (C) +0.2 +0.5 +0.0 +0.2 -0.1
carbon source NAG (C) 10 mM +0.3 +0.6 -0.1 +0.2 +0.0
carbon source Xanthosine (C) +0.3 +0.5 +0.3 -0.0 -0.1
carbon source methyl-trans-p-coumarate (C) +0.0 +0.6 -0.0 +0.3 +0.1
carbon source sn-glycero-3-phosphocholine (C) +0.3 +0.3 -0.2 +0.6 +0.2
carbon source D,L-Malic Acid (C) +0.1 +0.6 +0.1 +0.3 +0.1
carbon source butyrate (C) -0.2 +0.6 -0.1 +0.6 +0.3
carbon source methyl-trans-p-coumarate (C) +0.5 +0.4 -0.0 +0.4 +0.3
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