Fitness for 5 genes in Pseudomonas sp. RS175

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500 ntPFR28_01893 and PFR28_01894 are separated by 180 nucleotidesPFR28_01894 and PFR28_01895 are separated by 220 nucleotidesPFR28_01895 and PFR28_01896 are separated by 194 nucleotidesPFR28_01896 and PFR28_01897 are separated by 24 nucleotides PFR28_01893: PFR28_01893 - Putative hydro-lyase, at 2,126,154 to 2,126,957 _01893 PFR28_01894: PFR28_01894 - HTH-type transcriptional regulator HdfR, at 2,127,138 to 2,128,115 _01894 PFR28_01895: PFR28_01895 - Porin-like protein NicP, at 2,128,336 to 2,129,574 _01895 PFR28_01896: PFR28_01896 - Flavohemoprotein, at 2,129,769 to 2,131,823 _01896 PFR28_01897: PFR28_01897 - HTH-type transcriptional regulator MtrA, at 2,131,848 to 2,132,753 _01897
Group Condition PFR28_01893 PFR28_01894 PFR28_01895 PFR28_01896 PFR28_01897
carbon source Guanosine (C) N.D. -0.3 +0.0 -0.3 -1.9
carbon source sn-glycero-3-phosphocholine (C) N.D. +0.1 +0.2 +0.2 -2.8
carbon source Betaine (C) 2.5 mM N.D. -0.2 +0.0 -0.0 -2.0
carbon source Glycocyamine 20 mM (C) N.D. -0.5 -0.0 +0.1 -1.6
carbon source Betaine (C) N.D. +0.4 +0.0 +0.3 -2.7
carbon source Guanosine (C) N.D. -0.0 +0.0 -0.4 -1.0
carbon source 5-Aminovaleric carbon 10 mM N.D. +0.2 -0.1 +0.1 -1.5
carbon source Cytidine (C) N.D. -0.0 -0.1 -0.1 -1.0
carbon source D-Mannitol (C) 10 mM N.D. -0.2 -0.1 -0.2 -0.7
carbon source p-Coumaric (C) N.D. -0.5 -0.1 -0.2 -0.3
carbon source Cytidine carbon 10 mM N.D. +0.1 -0.0 +0.1 -1.3
carbon source Guanosine (C) N.D. -1.0 +0.0 -0.1 -0.0
carbon source L-Isoleucine carbon 10 mM N.D. +0.1 -0.0 -0.1 -1.0
carbon source 4-Aminobutyric (C) 10 mM N.D. -0.0 +0.0 -0.0 -1.0
carbon source methyl ferulate (C) N.D. -0.4 +0.1 +0.0 -0.8
carbon source D-Trehalose (C) 5 mM N.D. +0.2 -0.1 +0.1 -1.0
carbon source acetate carbon 10 mM N.D. +0.2 -0.1 +0.0 -1.0
carbon source 4-Hydroxyphenylpropionic (C) 2.5 mM N.D. -0.5 -0.2 +0.1 +0.4
carbon source methyl ferulate (C) N.D. -0.5 -0.0 +0.1 +0.6
carbon source Glycocyamine 10 mM (C) N.D. -0.3 -0.2 +0.2 +0.6
in planta Plant=Sorghum; PlantTreatment=None; Sample=root_top; GrowthSubstrate=calcine_clay; Collection=Direct N.D. -0.4 -0.2 +0.0 +0.8
carbon source m-Inositol (C) 10 mM N.D. -0.3 -0.1 +0.0 +0.8
carbon source L-Arabinose (C) 10 mM N.D. -0.1 -0.1 -0.1 +0.8
carbon source Xanthosine (C) N.D. -0.2 +0.2 -0.0 +0.6
carbon source sn-glycero-3-phosphocholine (C) N.D. -0.2 +0.2 -0.0 +0.9
carbon source acetate (C) 30 mM N.D. +0.2 -0.1 -0.0 +0.8
carbon source 4-Acetoxy-3-methoxycinnamic (C) N.D. -0.1 +0.1 -0.0 +1.1
carbon source Inosine carbon 10 mM N.D. +0.3 +0.0 -0.0 +0.8
carbon source methyl ferulate (C) N.D. +0.1 +0.1 +0.1 +0.9
carbon source p-Coumaric (C) N.D. -0.0 +0.1 -0.0 +1.2
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