Fitness for 5 genes in Pseudomonas sp. RS175

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500 ntPFR28_01867 and PFR28_01868 overlap by 4 nucleotidesPFR28_01868 and PFR28_01869 overlap by 4 nucleotidesPFR28_01869 and PFR28_01870 are separated by 259 nucleotidesPFR28_01870 and PFR28_01871 are separated by 180 nucleotides PFR28_01867: PFR28_01867 - Sensor histidine kinase RcsC, at 2,098,213 to 2,100,525 _01867 PFR28_01868: PFR28_01868 - Transcriptional regulatory protein DegU, at 2,100,522 to 2,101,190 _01868 PFR28_01869: PFR28_01869 - hypothetical protein, at 2,101,187 to 2,102,371 _01869 PFR28_01870: PFR28_01870 - hypothetical protein, at 2,102,631 to 2,103,152 _01870 PFR28_01871: PFR28_01871 - putative RNA polymerase sigma factor FecI, at 2,103,333 to 2,103,842 _01871
Group Condition PFR28_01867 PFR28_01868 PFR28_01869 PFR28_01870 PFR28_01871
carbon source L-Lysine (C) 10 mM -0.2 N.D. -0.8 +0.0 -0.7
carbon source Glycocyamine 10 mM (C) -0.2 N.D. -0.3 +0.1 -0.8
carbon source 5-Aminovaleric carbon 10 mM -0.0 N.D. -0.6 -0.1 -0.4
carbon source 4-Hydroxyphenylpropionic (C) 2.5 mM +0.2 N.D. -0.1 -0.3 -0.8
stress D-Glucose (C); with Chloride 400 mM +0.1 N.D. -0.2 -0.1 -0.8
carbon source D-Galacturonic Acid (C) 10 mM +0.2 N.D. +0.1 -0.0 -1.0
carbon source Guanosine (C) -0.2 N.D. +0.2 -0.4 -0.5
carbon source L-Carnitine (C) 10 mM -0.2 N.D. +0.1 +0.3 -0.8
carbon source caffeic (C) -0.2 N.D. -0.6 -0.2 +0.4
carbon source Malonic (C) 10 mM +0.1 N.D. -0.3 +0.2 -0.6
carbon source Choline (C) 10 mM +0.1 N.D. +0.4 -0.1 -0.7
carbon source L-Leucine (C) 10 mM +0.2 N.D. +0.3 -0.0 -0.8
carbon source Betaine (C) -0.2 N.D. -0.3 +0.5 -0.3
carbon source Glycerol carbon 20 mM +0.2 N.D. -0.1 +0.2 -0.6
carbon source Choline (C) 10 mM +0.2 N.D. +0.5 -0.0 -0.8
carbon source L-Lactate (C) 10 mM +0.2 N.D. +0.5 -0.0 -0.8
carbon source 4-Acetoxy-3-methoxycinnamic (C) -0.2 N.D. -0.2 -0.3 +0.7
carbon source Glycocyamine 20 mM (C) -0.2 N.D. -0.7 +0.3 +0.6
carbon source Betaine (C) 2.5 mM -0.1 N.D. +0.4 +0.3 -0.4
carbon source L-Lactate (C) 10 mM +0.3 N.D. +0.5 +0.2 -0.7
carbon source Uridine (C) 10 mM +0.1 N.D. +0.5 +0.2 -0.4
carbon source butyrate (C) +0.2 N.D. -0.3 -0.1 +0.6
carbon source Vanillic Acid (C) 2.5 mM +0.4 N.D. +0.5 -0.2 -0.0
carbon source p-Coumaric (C) 2.5 mM +0.3 N.D. +0.6 -0.2 +0.1
carbon source caffeic (C) -0.1 N.D. +0.4 +0.3 +0.5
carbon source 4-Aminobutyric (C) 10 mM -0.1 N.D. +0.9 +0.0 +0.3
carbon source p-Coumaric (C) 2.5 mM +0.3 N.D. +0.6 -0.1 +0.4
carbon source 4-Acetoxy-3-methoxycinnamic (C) +0.1 N.D. +0.5 +0.1 +0.6
in planta Plant=Sorghum; PlantTreatment=None; Sample=root_top; GrowthSubstrate=calcine_clay; Collection=Direct +0.0 N.D. +0.1 +0.5 +0.7
carbon source methyl ferulate (C) +0.3 N.D. +0.4 +0.1 +0.7
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