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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas sp. RS175
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500 nt
PFR28_01856 and PFR28_01857 overlap by 1 nucleotides
PFR28_01857 and PFR28_01858 are separated by 83 nucleotides
PFR28_01858 and PFR28_01859 are separated by 100 nucleotides
PFR28_01859 and PFR28_01860 are separated by 9 nucleotides
PFR28_01856: PFR28_01856 - Nitrite reductase [NAD(P)H], at 2,085,075 to 2,087,660
_01856
PFR28_01857: PFR28_01857 - Nitrite reductase (NADH) small subunit, at 2,087,660 to 2,088,037
_01857
PFR28_01858: PFR28_01858 - 'Inosine-5'-monophosphate dehydrogenase' transl_table=11, at 2,088,121 to 2,088,561
_01858
PFR28_01859: PFR28_01859 - hypothetical protein, at 2,088,662 to 2,089,699
_01859
PFR28_01860: PFR28_01860 - hypothetical protein, at 2,089,709 to 2,090,623
_01860
Group
Condition
PFR28
_01856
PFR28
_01857
PFR28
_01858
PFR28
_01859
PFR28
_01860
carbon source
4-Hydroxyphenylpropionic (C) 2.5 mM
+0.1
-0.4
-0.9
+0.1
-0.4
carbon source
acetate (C) 30 mM
+0.0
-0.4
-0.7
-0.1
-0.2
stress
D-Glucose (C); with Chloride 400 mM
+0.0
+0.0
-0.6
-0.4
-0.2
carbon source
4-Hydroxybenzoic Acid (C) 2.5 mM
+0.1
-0.6
-0.5
-0.0
-0.0
carbon source
Choline chloride (C)
+0.2
-0.1
-0.4
-0.2
-0.5
carbon source
Vanillic Acid (C) 2.5 mM
+0.1
-0.5
-0.9
+0.1
+0.2
carbon source
octanoate (C)
-0.0
+0.1
-0.5
+0.2
-0.8
carbon source
Vanillic Acid (C) 2.5 mM
-0.1
-0.7
-0.7
+0.2
+0.5
carbon source
Betaine (C) 2.5 mM
-0.1
-0.2
+0.4
-0.6
-0.2
carbon source
L-Arginine (C) 10 mM
+0.1
-0.2
-0.6
-0.3
+0.3
carbon source
caffeic (C)
-0.1
+0.3
-0.4
-0.3
-0.2
carbon source
Inosine (C)
-0.1
-0.2
+0.4
-0.4
-0.2
carbon source
NAG carbon 10 mM
-0.0
+0.2
-0.7
+0.2
-0.2
carbon source
Ferulic Acid (C) 2.5 mM
+0.2
-0.2
-0.7
-0.1
+0.3
carbon source
4-Hydroxyphenylpropionic (C) 2.5 mM
-0.0
-0.2
-0.4
-0.3
+0.4
carbon source
Ferulic Acid (C) 2.5 mM
+0.2
-0.3
-0.7
-0.0
+0.3
carbon source
p-Coumaric (C) 2.5 mM
+0.2
-0.3
-0.4
-0.1
+0.4
carbon source
L-Lactate (C) 10 mM
+0.4
+0.1
+0.7
-0.1
-1.4
carbon source
Vanillic Acid (C) 2.5 mM
+0.1
-0.5
-0.4
-0.1
+0.6
carbon source
butyrate (C)
+0.2
-0.1
+0.3
-0.3
-0.3
carbon source
p-Coumaric (C) 2.5 mM
+0.2
-0.3
-0.4
+0.1
+0.2
carbon source
L-Phenylalanine carbon 5 mM
+0.2
+0.4
-0.1
-0.1
-0.6
carbon source
Guanosine (C)
+0.1
+0.1
-0.6
-0.1
+0.4
carbon source
4-Hydroxybenzoic Acid (C) 2.5 mM
+0.2
-0.4
-0.2
-0.0
+0.5
carbon source
succinate (C)
+0.1
+0.3
-0.7
+0.1
+0.1
carbon source
5-Aminovaleric carbon 10 mM
+0.1
+0.2
-0.5
-0.1
+0.4
carbon source
L-Phenylalanine carbon 5 mM
+0.2
+0.2
+0.2
+0.2
-0.6
carbon source
butyrate (C)
-0.1
+0.2
+0.5
-0.1
-0.2
carbon source
L-Hydroxyproline (C) 10 mM
-0.1
-0.3
+0.4
-0.1
+0.4
carbon source
Inosine carbon 10 mM
-0.0
+0.4
+0.1
-0.2
+0.5
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