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Fitness for 5 genes in
Pseudomonas sp. RS175
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500 nt
PFR28_01798 and PFR28_01799 overlap by 4 nucleotides
PFR28_01799 and PFR28_01800 are separated by 334 nucleotides
PFR28_01800 and PFR28_01801 are separated by 262 nucleotides
PFR28_01801 and PFR28_01802 overlap by 32 nucleotides
PFR28_01798: PFR28_01798 - Quinolone resistance transporter, at 2,015,597 to 2,016,994
_01798
PFR28_01799: PFR28_01799 - Glucarate dehydratase, at 2,016,991 to 2,018,265
_01799
PFR28_01800: PFR28_01800 - hypothetical protein, at 2,018,600 to 2,019,784
_01800
PFR28_01801: PFR28_01801 - hypothetical protein, at 2,020,047 to 2,021,210
_01801
PFR28_01802: PFR28_01802 - Sensor histidine kinase RcsC, at 2,021,179 to 2,023,782
_01802
Group
Condition
PFR28
_01798
PFR28
_01799
PFR28
_01800
PFR28
_01801
PFR28
_01802
carbon source
methyl-trans-p-coumarate (C)
+0.0
-0.0
+0.2
-2.5
-2.2
carbon source
Shikimic Acid carbon 10 mM
-0.0
+0.2
-0.0
-2.0
-2.0
carbon source
methyl-trans-p-coumarate (C)
-0.0
+0.2
+0.3
-2.0
-1.7
carbon source
L-Carnitine (C) 10 mM
+0.1
-0.5
-0.1
-1.4
-1.2
carbon source
Shikimic Acid carbon 10 mM
-0.0
-0.1
+0.0
-1.3
-1.6
carbon source
Shikimic Acid carbon 10 mM
-0.0
+0.2
+0.0
-1.3
-1.7
carbon source
Methyl 3-(4-hydroxyphenyl)propionate (C) 2.5 mM
+0.3
-0.4
+0.2
-1.2
-1.7
carbon source
methyl-trans-p-coumarate (C)
+0.3
+0.4
+0.3
-1.4
-2.0
carbon source
L-Carnitine (C) 10 mM
-0.0
+0.1
-0.1
-1.2
-1.3
carbon source
Quinic Acid (C) 10 mM
+0.1
-0.2
-0.1
-1.1
-1.1
carbon source
4-Hydroxybenzoic Acid (C) 2.5 mM
+0.0
-0.3
+0.1
-0.6
-1.1
carbon source
L-pyroglutamic carbon 10 mM
-0.0
+0.1
-0.0
-0.6
-1.2
carbon source
4-Hydroxybenzoic Acid (C) 2.5 mM
+0.1
-0.2
+0.2
-0.5
-1.3
carbon source
4-Hydroxybenzoic Acid (C) 2.5 mM
+0.2
-0.3
+0.0
-0.3
-1.1
carbon source
Quinic Acid (C) 10 mM
+0.2
-0.3
+0.1
-0.7
-0.7
carbon source
L-pyroglutamic carbon 10 mM
+0.0
+0.1
-0.1
-0.4
-0.8
carbon source
p-Coumaric (C) 2.5 mM
+0.1
-0.3
+0.1
-0.5
-0.7
carbon source
p-Coumaric (C) 2.5 mM
+0.1
-0.3
+0.0
-0.4
-0.5
carbon source
L-pyroglutamic carbon 10 mM
+0.0
+0.2
+0.1
-0.4
-0.8
carbon source
Betaine (C)
-0.1
-0.3
+0.5
-0.3
-0.5
carbon source
Shikimic Acid (C) 10 mM
+0.1
+0.4
+0.0
-0.7
-0.5
carbon source
methyl ferulate (C)
-0.1
+0.0
+0.5
-0.2
-0.6
carbon source
Guanosine (C)
-0.3
-0.1
+0.6
-0.0
-0.3
carbon source
butyrate (C) 10 mM
-0.0
+0.1
-0.3
-0.3
+0.7
carbon source
Vanillic Acid (C) 2.5 mM
-0.2
-0.5
+0.3
+0.5
+0.4
carbon source
Vanillic Acid (C) 2.5 mM
+0.0
-0.5
+0.2
+0.4
+0.5
carbon source
Vanillic Acid (C) 2.5 mM
+0.2
-0.1
-0.1
+0.8
+0.7
carbon source
4-Hydroxyphenylpropionic (C) 2.5 mM
+0.0
-0.3
-0.4
+1.1
+1.0
carbon source
4-Hydroxyphenylpropionic (C) 2.5 mM
+0.3
-0.4
+0.2
+0.7
+0.8
carbon source
4-Hydroxyphenylpropionic (C) 2.5 mM
+0.1
+0.0
-0.2
+1.3
+1.1
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