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Protein
Homologs
Fitness for 5 genes in
Pseudomonas sp. RS175
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFR28_01764 and PFR28_01765 are separated by 195 nucleotides
PFR28_01765 and PFR28_01766 are separated by 368 nucleotides
PFR28_01766 and PFR28_01767 are separated by 18 nucleotides
PFR28_01767 and PFR28_01768 are separated by 343 nucleotides
PFR28_01764: PFR28_01764 - hypothetical protein, at 1,982,612 to 1,982,875
_01764
PFR28_01765: PFR28_01765 - Protein DipZ, at 1,983,071 to 1,984,282
_01765
PFR28_01766: PFR28_01766 - hypothetical protein, at 1,984,651 to 1,984,968
_01766
PFR28_01767: PFR28_01767 - Acetoin catabolism regulatory protein, at 1,984,987 to 1,986,855
_01767
PFR28_01768: PFR28_01768 - hypothetical protein, at 1,987,199 to 1,988,269
_01768
Group
Condition
PFR28
_01764
PFR28
_01765
PFR28
_01766
PFR28
_01767
PFR28
_01768
carbon source
L-Lactate (C) 10 mM
-1.4
+0.3
-0.7
-0.3
-0.3
carbon source
methyl-trans-p-coumarate (C)
-0.1
+0.0
-0.0
-0.3
-1.8
carbon source
D(+)-Glucuronic carbon 10 mM
-0.3
-0.1
+0.2
-0.2
-1.6
carbon source
Vanillic Acid (C) 2.5 mM
-0.5
-0.1
+0.3
-0.6
-0.8
carbon source
Ferulic Acid (C) 2.5 mM
-0.5
+0.1
-0.4
-0.4
-0.5
carbon source
D-(+)-Galactosamine (C) 10 mM
-0.3
+0.0
-0.1
-0.3
-0.9
carbon source
Betaine (C) 2.5 mM
-0.2
-0.1
-0.5
-0.7
-0.1
carbon source
L-Phenylalanine 5 mM (C)
-0.2
-0.1
-0.3
-0.4
-0.6
carbon source
p-Coumaric (C)
-0.4
-0.0
+0.1
-0.3
-1.0
carbon source
Glycocyamine 10 mM (C)
-0.3
-0.1
+0.1
-0.3
-0.9
carbon source
D-(+)-Galactosamine (C) 10 mM
-0.5
-0.1
-0.4
-0.6
+0.2
carbon source
p-Coumaric (C) 2.5 mM
-0.5
+0.1
-0.2
-0.3
-0.6
carbon source
p-Coumaric (C)
+0.1
+0.1
-0.3
-0.0
-1.1
carbon source
4-Hydroxyphenylpropionic (C) 2.5 mM
-0.7
+0.2
-0.2
-0.4
-0.1
carbon source
Ferulic Acid (C) 2.5 mM
-0.3
+0.1
-0.2
-0.4
-0.4
carbon source
Vanillic Acid (C) 2.5 mM
-0.5
+0.2
-0.1
-0.5
-0.2
carbon source
butyrate (C) 10 mM
-0.8
+0.4
+0.2
+0.0
-0.8
carbon source
Methyl 3-(4-hydroxyphenyl)propionate (C) 2.5 mM
-0.7
+0.2
+0.2
-0.2
-0.3
mixed carbon source
mixed (C)s Trisodium citrate 10 mM and 4-azido-L-phenylalanine 10 mM
-0.3
-0.0
+0.3
-0.3
-0.6
carbon source
Xanthosine (C) 10 mM
-0.5
+0.1
+0.2
+0.2
-0.6
carbon source
Inosine (C)
+0.3
+0.1
+0.1
-0.0
-1.0
carbon source
4-Acetoxy-3-methoxycinnamic (C)
+0.6
+0.1
+0.3
-0.4
-0.8
carbon source
butyrate (C)
+0.4
+0.2
+0.2
+0.1
-1.0
carbon source
methyl-trans-p-coumarate (C)
+0.2
+0.2
+0.2
-0.6
+0.4
carbon source
Quinic Acid (C) 10 mM
-0.2
+0.3
-0.2
-0.0
+0.7
carbon source
L-Hydroxyproline carbon 10 mM
-0.0
+0.4
-0.3
-0.2
+0.7
carbon source
Guanosine (C)
-0.0
+0.0
+0.4
-0.4
+0.6
in planta
Plant=Sorghum; PlantTreatment=None; Sample=root_top; GrowthSubstrate=calcine_clay; Collection=Direct
+1.1
+0.1
+0.0
+0.4
-0.7
carbon source
Betaine (C)
+0.2
-0.3
+0.0
+0.2
+0.9
carbon source
L-Hydroxyproline (C) 10 mM
-0.0
+0.4
-0.2
+0.1
+0.8
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PFR28_01766
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