Fitness for 5 genes in Pseudomonas sp. RS175

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500 ntPFR28_01714 and PFR28_01715 overlap by 4 nucleotidesPFR28_01715 and PFR28_01716 are separated by 119 nucleotidesPFR28_01716 and PFR28_01717 are separated by 182 nucleotidesPFR28_01717 and PFR28_01718 are separated by 75 nucleotides PFR28_01714: PFR28_01714 - hypothetical protein, at 1,906,805 to 1,907,107 _01714 PFR28_01715: PFR28_01715 - IS3 family transposase ISCfr25, at 1,907,104 to 1,907,940 _01715 PFR28_01716: PFR28_01716 - HTH-type transcriptional activator RhaS, at 1,908,060 to 1,908,965 _01716 PFR28_01717: PFR28_01717 - hypothetical protein, at 1,909,148 to 1,910,440 _01717 PFR28_01718: PFR28_01718 - Response regulator receiver protein CpdR, at 1,910,516 to 1,910,887 _01718
Group Condition PFR28_01714 PFR28_01715 PFR28_01716 PFR28_01717 PFR28_01718
carbon source D-Mannitol (C) 10 mM N.D. N.D. -4.8 +0.1 -1.2
carbon source D-Mannitol carbon 10 mM N.D. N.D. -5.0 -0.2 -0.5
carbon source D-Mannitol carbon 10 mM N.D. N.D. -4.8 -0.1 -0.4
in planta Plant=Sorghum; PlantTreatment=None; Sample=root_top; GrowthSubstrate=calcine_clay; Collection=Direct N.D. N.D. +0.1 +0.2 -5.5
carbon source D-Xylose (C) 10 mM N.D. N.D. -3.6 -0.3 -0.8
carbon source D-Mannitol (C) 10 mM N.D. N.D. -4.5 +0.2 -0.2
carbon source D-Xylose (C) 10 mM N.D. N.D. -4.2 -0.0 -0.3
carbon source D-Mannitol (C) 10 mM N.D. N.D. -4.1 +0.1 -0.5
carbon source D-Xylose (C) 10 mM N.D. N.D. -4.0 +0.1 -0.4
carbon source D-Mannitol carbon 10 mM N.D. N.D. -4.1 +0.1 -0.0
carbon source D-Xylose carbon 10 mM N.D. N.D. -3.5 -0.1 -0.3
carbon source D-Xylose carbon 10 mM N.D. N.D. -3.5 -0.1 +0.5
carbon source 4-Hydroxybenzoic Acid (C) 2.5 mM N.D. N.D. +0.2 -0.3 -2.5
carbon source D-Xylose carbon 10 mM N.D. N.D. -2.2 -0.1 -0.3
carbon source Uridine (C) 10 mM N.D. N.D. -0.1 -0.3 -1.5
carbon source Guanosine (C) N.D. N.D. +0.2 -0.6 -1.4
carbon source D-Trehalose (C) 5 mM N.D. N.D. -0.1 -0.1 -1.6
carbon source Shikimic Acid (C) 10 mM N.D. N.D. -0.3 +0.1 -1.5
carbon source Betaine (C) N.D. N.D. +0.3 -0.8 -1.3
carbon source D-Galactose carbon 10 mM N.D. N.D. +0.0 -0.4 -1.2
carbon source Quinic Acid (C) 10 mM N.D. N.D. +0.1 -0.2 -1.4
carbon source methyl-trans-p-coumarate (C) N.D. N.D. +0.1 +0.1 -1.5
carbon source caffeic (C) N.D. N.D. +0.3 -0.2 -1.4
carbon source caffeic (C) N.D. N.D. +0.3 -0.0 -1.3
carbon source p-Coumaric (C) N.D. N.D. +0.6 +0.1 -1.5
carbon source D-Mannose carbon 10 mM N.D. N.D. +1.0 -0.3 -0.6
carbon source D-Mannose carbon 10 mM N.D. N.D. +1.6 -0.3 -0.8
carbon source D-Mannose carbon 10 mM N.D. N.D. +1.4 -0.3 -0.5
carbon source 4-Hydroxyphenylpropionic (C) 2.5 mM N.D. N.D. -0.1 -0.7 +1.3
carbon source Guanosine (C) N.D. N.D. +0.4 +0.2 +1.3
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