Fitness for 5 genes in Pseudomonas sp. RS175

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500 ntPFR28_01456 and PFR28_01457 overlap by 1 nucleotidesPFR28_01457 and PFR28_01458 overlap by 8 nucleotidesPFR28_01458 and PFR28_01459 are separated by 141 nucleotidesPFR28_01459 and PFR28_01460 are separated by 39 nucleotides PFR28_01456: PFR28_01456 - hypothetical protein, at 1,588,933 to 1,590,282 _01456 PFR28_01457: PFR28_01457 - hypothetical protein, at 1,590,282 to 1,591,163 _01457 PFR28_01458: PFR28_01458 - Peptidoglycan deacetylase, at 1,591,156 to 1,591,998 _01458 PFR28_01459: PFR28_01459 - L-cystine-binding protein FliY, at 1,592,140 to 1,592,964 _01459 PFR28_01460: PFR28_01460 - Glutamine transport ATP-binding protein GlnQ, at 1,593,004 to 1,593,768 _01460
Group Condition PFR28_01456 PFR28_01457 PFR28_01458 PFR28_01459 PFR28_01460
carbon source butyrate (C) 10 mM +0.1 +0.1 -0.9 +0.1 -4.3
carbon source 4-Hydroxyphenylpropionic (C) 2.5 mM +1.0 -0.3 +0.2 +0.0 -5.4
carbon source butyrate (C) 10 mM +0.3 +0.1 +0.0 -0.1 -4.5
carbon source Cytidine carbon 10 mM +0.3 +0.0 +0.1 +0.4 -4.0
carbon source Uridine (C) 10 mM -0.3 +0.1 -0.4 -0.0 -2.4
carbon source acetate carbon 10 mM -0.2 -0.3 -0.1 -0.1 -1.7
carbon source D-(+)-Galactosamine (C) 10 mM -0.4 +0.2 -0.2 -0.5 -1.4
carbon source Shikimic Acid (C) 10 mM +0.0 +0.1 -0.4 -0.3 -1.9
carbon source sn-glycero-3-phosphocholine (C) 10 mM +0.1 +0.1 -0.2 +0.1 -2.3
carbon source D-Fructose carbon 10 mM +0.3 -0.2 +0.0 -0.2 -2.1
carbon source D,L-Malic Acid (C) 10 mM -0.2 +0.2 -0.2 +0.1 -2.0
carbon source Methyl 3-(4-hydroxyphenyl)propionate (C) 2.5 mM +0.8 +0.2 +0.1 +0.0 -3.2
carbon source Vanillic Acid (C) 2.5 mM +0.5 +0.6 -0.1 +0.5 -3.4
carbon source propionate (C) 20 mM -0.1 +0.2 -0.2 +0.1 -2.0
carbon source Betaine (C) -0.7 -0.3 -0.3 +0.4 -0.9
carbon source Ferulic Acid (C) 2.5 mM +0.5 +0.2 -0.3 +0.1 -2.0
carbon source caffeic (C) 2.5 mM +0.6 -0.1 -0.4 +0.3 -1.9
carbon source pyruvate (C) -0.1 +0.1 +0.3 +0.1 -1.9
carbon source Guanosine (C) -0.7 +0.3 -1.2 -0.3 +0.4
carbon source Uridine (C) 10 mM +0.2 +0.4 -0.8 +0.3 -1.4
carbon source NAG (C) 10 mM -0.0 +0.2 +0.3 +0.1 -1.8
carbon source Ferulic Acid (C) 2.5 mM +0.6 +0.0 -0.2 +0.2 -1.7
in planta Plant=Sorghum; PlantTreatment=None; Sample=root_top; GrowthSubstrate=calcine_clay; Collection=Direct +0.3 -0.3 +0.4 +0.2 -1.6
carbon source L-Lactate (C) 10 mM -0.3 +0.4 +0.4 +0.1 -1.4
carbon source p-Coumaric (C) 2.5 mM +0.8 -0.1 -0.3 +0.2 -1.5
carbon source p-Coumaric (C) 2.5 mM +0.6 +0.2 -0.4 +0.3 -1.2
carbon source 4-Hydroxybenzoic Acid (C) 2.5 mM +1.0 -0.0 -0.1 +0.2 -1.3
carbon source Vanillic Acid (C) 2.5 mM +0.9 +0.5 -0.1 +0.5 -1.0
carbon source octanoate (C) -0.4 -0.3 -0.2 +0.3 +1.7
carbon source methyl-trans-p-coumarate (C) +0.3 -0.2 +0.3 +0.1 +1.7
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